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BaseInfo

ncRNA ID	novel_osa_miR1993
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:15365049-15365219 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849772;SRR1849774;SRR1849776;SRR2040382;SRR2040388;SRR2040389;SRR2040390;SRR2040391;SRR2040392;SRR2040395;SRR2040396;SRR2040401;SRR2040404;SRR2040405;SRR2040406;SRR2040409;SRR2040411;SRR2857729;SRR2857730;SRR2857733;SRR5049786
Length	21
Mature sequence(if miRNA)	1 - UUUUUUGACAAACGUUUGACC - 21
Stem-loop(if miRNA)	--         A           U   A             A         U     --UU  UUUUAUUGUGACUUGAUUUAUCA   UUUUUUGAC AACGUUUGACC UUC UCUUAUUUAAAAA UUUAUGUAA UAUAA    UG                       U   ||||||||| ||||||||||| ||| ||||||||||||| ||||||||| |||||    ||                       C   GAAAAAUUG UUGCAAACUGG GAG AGAAUAAGUUUUU AAAUACGUU AUAUU    UG                       A CU         G           U   C             A         U     UUUA  AAUACAGUACGAAUUUAUUGUAA
Stem-loop sequence	UUUUUUGACAAACGUUUGACCUUUCAUCUUAUUUAAAAAAUUUAUGUAAUUAUAAUUUGUUUUAUUGUGACUUGAUUUAUCAUCAAAUGUUAUUUAAGCAUGACAUAAGUAUUUUUAUAUUUGCAUAAAAUUUUUGAAUAAGACGAGUGGUCAAACGUUGGUUAAAAAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835080.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   ||||||||||||||||||||= targets:1134   GGUCAAACGUUUGUCAAAAAG   1154 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
XM_015781390.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   |||||||||||*||||||||= targets:1444   GGUCAAACGUUGGUCAAAAAG   1464 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   |||||||||||*||||||||= targets:1444   GGUCAAACGUUGGUCAAAAAG   1464 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK288703.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   |*|||||=||||||||||||= targets:3207   GAUCAAAUGUUUGUCAAAAAG   3227 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
HI404014.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *||||||||||*||||||||= targets:178   AGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
JB164475.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *||||||||||*||||||||= targets:178   AGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *||||||||||*||||||||= targets:178   AGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
AK068361.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *|||||||||||*|||||||= targets:744   AGUCAAACGUUUAUCAAAAAG   764 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence	NA	coding protein	psRNATarget
XM_015766454.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *|**|||=||||||||||||| targets:1921   AGAGAAAUGUUUGUCAAAAAA   1941 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 (LOC4326771), mRNA	ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1(LOC4326771)	coding protein	psRNATarget
AK071981.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *|**|||=||||||||||||| targets:1929   AGAGAAAUGUUUGUCAAAAAA   1949 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013089O19, full insert sequence	NA	coding protein	psRNATarget