| ncRNA ID | novel_osa_miR1988 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr6:12449729-12449955 [-] |
| Reference genome | IRGSP-1.0 |
| Source | SRR1849765;SRR1849770;SRR1849771;SRR1849773;SRR1849774;SRR1849775;SRR2040380;SRR2040386;SRR2040387;SRR2040388;SRR2040389;SRR2040390;SRR2040392;SRR2040394;SRR2040397;SRR2040398;SRR2040399;SRR2040402;SRR2040404;SRR2040407;SRR2040408;SRR2040411;SRR3123648;SRR3123651;SRR1612403;SRR1738235;SRR1738240 |
| Length | 24 |
| Mature sequence(if miRNA) | 204 - ACGGAACUACAGAUUUAAUGCACC - 227 |
| Stem-loop(if miRNA) |
-- UGCACC A UG GAAGUA A C GU --UAG C ---UA UUA ACGGAACUACAGAUUUAA AUAUCACAAAACUAU GAUUUAG AU AUCA AGAACUACAUAUU UAGA U AUCAUAG ACUAU UUUAU A |||||||||||||||||| ||||||||||||||| ||||||| || |||| ||||||||||||| |||| | ||||||| ||||| ||||| UGCCUUGAUGUCUAAAUU UAUAGUGUUUUGAUA CUAAAUU UG UAGU UUUUGAUGUGUAA AUUU A UAGUAUU UGAUG AAAUA A AG CUAUAA A GU AUAAAA G A UG UAAAA U UAUAA UUG |
| Stem-loop sequence | ACGGAACUACAGAUUUAAUGCACCAUAUCACAAAACUAUAGAUUUAGUGAUGAAGUAAUCAAAGAACUACAUAUUCUAGAGUUUAGAUCAUAGCACUAUUAUUUAUUUAAAGUUAUAAAAAUAUGUAGUUUUAUGAUAAAAUAGUUUUAAAAUGUGUAGUUUUGUGAUAAAAUAGUUGUUAAAUCAAUAGUUUUGUGAUAUAAUAUCUUAAAUCUGUAGUUCCGUGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015792093.1 |
|
1.0 | PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA | pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353) | coding protein | psRNATarget | |||||||||
| AK101635.1 |
|
1.0 | Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK288881.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence | NA | coding protein | psRNATarget |