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BaseInfo

ncRNA ID novel_osa_miR1982
Species Oryza sativa
Class miRNA
Genome position Chr5:782420-782600 [-]
Reference genome IRGSP-1.0
Source SRR1849765
Length 24
Mature sequence(if miRNA) 1 - UUUUGUUGGACCAGAGUAAAUCUC - 24
Stem-loop(if miRNA) --         C            A   C                    C           A    UA   -----AU  A UAUAACAAUAU
  GAUUUGCUC GGUCCAACAAAA GUA CUUGAGGUACCGGUACCUCA GGUACCAAAUC UUUC  AUC       UG A           C
  ||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||  |||       || |           C
  CUAAAUGAG CCAGGUUGUUUU CAU GAGCUCCAUGGCCAUGGAGU CCAUGGUUUAG AAAG  UAG       GA U           A
CU         A            C   A                    A           C    GC   CAACCUA  - CGAUCCAUCCU
Stem-loop sequence GAUUUGCUCCGGUCCAACAAAAAGUACCUUGAGGUACCGGUACCUCACGGUACCAAAUCAUUUCUAAUCAUUGAAUAUAACAAUAUCCAUCCUACCUAGCUAGAUCCAACGAUCGGAAACGAUUUGGUACCAUGAGGUACCGGUACCUCGAGAUACCUUUUGUUGGACCAGAGUAAAUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015786123.1
ncRNA:24   CUCUAAAUGAGACCAGGUUGUUUU   1
  |||||||||||*||||||||||||
targets:607   GAGAUUUACUCCGGUCCAACAAAA   630

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
AK287529.1
ncRNA:24   CUCUAAAUGAGACCAGGUUGUUUU   1
  |||||||||||*||||||||||||
targets:118   GAGAUUUACUCCGGUCCAACAAAA   141

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:24   CUCUAAAUGAGACCAGGUUGUUUU   1
  |||||||||||*||||||||||||
targets:118   GAGAUUUACUCCGGUCCAACAAAA   141

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
XM_015755454.1
ncRNA:24   CUCUAAAUGAGACCAGGUUGUUUU   1
  |||||||=|||*||||||||||||
targets:981   GAGAUUUGCUCCGGUCCAACAAAA   1004

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346980 (LOC4346980), mRNA uncharacterized LOC4346980(LOC4346980) coding protein psRNATarget
AK107667.1
ncRNA:24   CUCUAAAUGAGACCAGGUUGUUUU   1
  |||||||=|||*||||||||||||
targets:1042   GAGAUUUGCUCCGGUCCAACAAAA   1065

2.5 Oryza sativa Japonica Group cDNA clone:002-131-H04, full insert sequence NA coding protein psRNATarget
XM_015755204.1
ncRNA:24   CUCUAAAUGAGACCAGGUUGUUUU   1
  |||||||=|||*||||||||||||
targets:1089   GAGAUUUGCUCCGGUCCAACAAAA   1112

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347453 (LOC4347453), mRNA uncharacterized LOC4347453(LOC4347453) coding protein psRNATarget
AK241559.1
ncRNA:24   CUCUAAAUGAGACCAGGUUGUUUU   1
  |||||||=|||*||||||||||||
targets:768   GAGAUUUGCUCCGGUCCAACAAAA   791

2.5 Oryza sativa Japonica Group cDNA, clone: J065178L07, full insert sequence NA coding protein psRNATarget
HI403533.1
ncRNA:20   AAAUGAGACCAGGUUGUUUU   1
  |||==|||||||||||||||
targets:1   UUUGUUCUGGUCCAACAAAA   20

2.0 Sequence 1658 from Patent EP2074227 NA coding protein psRNATarget
JB163994.1
ncRNA:20   AAAUGAGACCAGGUUGUUUU   1
  |||==|||||||||||||||
targets:1   UUUGUUCUGGUCCAACAAAA   20

2.0 Sequence 1658 from Patent EP2559767 NA coding protein psRNATarget
LQ235663.1
ncRNA:20   AAAUGAGACCAGGUUGUUUU   1
  |||==|||||||||||||||
targets:1   UUUGUUCUGGUCCAACAAAA   20

2.0 Sequence 1658 from Patent EP2985353 NA coding protein psRNATarget
LQ236668.1
ncRNA:21   UAAAUGAGACCAGGUUGUUUU   1
  ||||=|||*||||||||||||
targets:1   AUUUGCUCCGGUCCAACAAAA   21

2.5 Sequence 2663 from Patent EP2985353 NA coding protein psRNATarget
JB164999.1
ncRNA:21   UAAAUGAGACCAGGUUGUUUU   1
  ||||=|||*||||||||||||
targets:1   AUUUGCUCCGGUCCAACAAAA   21

2.5 Sequence 2663 from Patent EP2559767 NA coding protein psRNATarget
HI404538.1
ncRNA:21   UAAAUGAGACCAGGUUGUUUU   1
  ||||=|||*||||||||||||
targets:1   AUUUGCUCCGGUCCAACAAAA   21

2.5 Sequence 2663 from Patent EP2074227 NA coding protein psRNATarget
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