Search result

BaseInfo

ncRNA ID	novel_osa_miR1980
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:10763919-10764091 [-]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR4407775
Length	24
Mature sequence(if miRNA)	150 - UUUUUUCUUGCAACGUUUGACCAC - 173
Stem-loop(if miRNA)	--     U                                UU       C    AUAAAAAACGAAAAG     -    AAG  C  U   UUUUU CUUGCAACGUUUGACCACUCGUCUUAUUUAAA  UUUUUUG AAAU               UUGUG CUUA   UA UG A   ||||| ||||||||||||||||||||||||||||||||  ||||||| ||||               ||||| ||||   || ||   AAAAA GAACGUUGCAAACUGGUGAGCAGAAUAAGUUU  AAAAAAC UUUA               AACAC GAAU   AU AU G UC     C                                -U       -    AUAAUUAAUAAAAUA     U    GAA  A  A
Stem-loop sequence	UUUUUUCUUGCAACGUUUGACCACUCGUCUUAUUUAAAUUUUUUUUGCAAAUAUAAAAAACGAAAAGUUGUGCUUAAAGUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAUUAAUAAUUUCAAAAAAUUUUGAAUAAGACGAGUGGUCAAACGUUGCAAGCAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100009.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:1038   GUGGUCAAACGUUGCAAGCAAAAA   1061 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:3058   GUGGUCAAACGUUGCAAGCAAAAA   3081 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:4054   GUGGUCAAACGUUGCAAGCAAAAA   4077 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:1852   GUGGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:157   GUGGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
HI404548.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:157   GUGGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget
JB165009.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:157   GUGGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
AK289089.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:1452   GUGGUCAAAUGUUGCAAGCAAAAA   1475 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence	NA	coding protein	psRNATarget
XM_015790883.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:1913   GUGGUCAAAUGUUGCAAGCAAAAA   1936 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA	7-deoxyloganetic acid glucosyltransferase(LOC9267967)	coding protein	psRNATarget
AK102017.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   *|||||||||||||||||*||||| targets:1057   AUGGUCAAACGUUGCAAGCAAAAA   1080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||*||||||||||||||*||||| targets:1978   GUGAUCAAACGUUGCAAGCAAAAA   2001 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||*||||||||||||||*||||| targets:2072   GUGAUCAAACGUUGCAAGCAAAAA   2095 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget