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BaseInfo

ncRNA ID novel_osa_miR1978
Species Oryza sativa
Class miRNA
Genome position Chr4:18470800-18470858 [+]
Reference genome IRGSP-1.0
Source SRR1298758;SRR1555747;SRR2097779;SRR2099567;SRR2458631;SRR2857736;SRR1556011;SRR3123646;SRR4407953;SRR1298766;SRR4407957;SRR5351740;SRR1556020;SRR1609313;SRR1300837;SRR1654490;SRR1654491;SRR1738228
Length 24
Mature sequence(if miRNA) 1 - AGCUUCUGACAGCUGCAGUUUCUC - 24
Stem-loop(if miRNA) --                           
  AGCUUCUGACAGCUGCAGUUUCUCUUGU
  |||||||||||||||||||||||||||U
  UCGAAGACUGUCGACGUCGAAGAGGAUC
CC                           
Stem-loop sequence AGCUUCUGACAGCUGCAGUUUCUCUUGUUCUAGGAGAAGCUGCAGCUGUCAGAAGCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235991.1
ncRNA:24   CUCUUUGACGUCGACAGUCUUCGA   1
  |||||=||||||||||||||||||
targets:44   GAGAAGCUGCAGCUGUCAGAAGCU   67

1.0 Sequence 1986 from Patent EP2985353 NA coding protein psRNATarget
HI403861.1
ncRNA:24   CUCUUUGACGUCGACAGUCUUCGA   1
  |||||=||||||||||||||||||
targets:44   GAGAAGCUGCAGCUGUCAGAAGCU   67

1.0 Sequence 1986 from Patent EP2074227 NA coding protein psRNATarget
JB164322.1
ncRNA:24   CUCUUUGACGUCGACAGUCUUCGA   1
  |||||=||||||||||||||||||
targets:44   GAGAAGCUGCAGCUGUCAGAAGCU   67

1.0 Sequence 1986 from Patent EP2559767 NA coding protein psRNATarget