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BaseInfo

ncRNA ID	novel_osa_miR1968
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:34856881-34857033 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849771
Length	21
Mature sequence(if miRNA)	133 - UCAAGGACCGUAGAAUUGUUC - 153
Stem-loop(if miRNA)	--G        UA                            UU    U UAUCG       --GA             C    UAAUUUUA  GUUCUUGAGAAGGUAUCAUGAGGUAUCA  UUUU C     UAGAUUU    UAUCUCUUGGUAU U    ||||||||  ||||||||||||||||||||||||||||  |||| |     |||||||    |||||||||||||    GUUAAGAU  CAGGAACUCUUCCAUAGUAUUCCAUGGU  AAAA G     AUUUAAA    AUGGAGGAUCAUA A CUU        GC                            UU    U ---UA       AACC             A
Stem-loop sequence	GUAAUUUUAUAGUUCUUGAGAAGGUAUCAUGAGGUAUCAUUUUUUUCUAUCGUAGAUUUGAUAUCUCUUGGUAUCUAAAUACUAGGAGGUACCAAAAAUUUAAUGUAAAAUUUGGUACCUUAUGAUACCUUCUCAAGGACCGUAGAAUUGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015786627.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   ||=||||||||=||||||||| targets:535   GAGCAAUUCUAUGGUCCUUGA   555 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA	uncharacterized LOC107281210(LOC107281210)	coding protein	psRNATarget
XM_015786027.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   *|=|||||||||||||||||| targets:4597   AAGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
AK105471.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   ||=||||||||||||||||*| targets:1225   GAGCAAUUCUACGGUCCUUAA   1245 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   ||=||||||||||||||||*| targets:1233   GAGCAAUUCUACGGUCCUUAA   1253 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   ||=||||||||||||||||*| targets:1251   GAGCAAUUCUACGGUCCUUAA   1271 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   ||=||||||||||||||||*| targets:1685   GAGCAAUUCUACGGUCCUUAA   1705 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   ||=||||||||||||||||*| targets:2066   GAGCAAUUCUACGGUCCUUAA   2086 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:21   CUUGUUAAGAUGCCAGGAACU   1   ||=||||||||||||||||*| targets:2110   GAGCAAUUCUACGGUCCUUAA   2130 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget