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BaseInfo

ncRNA ID	novel_osa_miR1965
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:25936601-25936771 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR2040386;SRR2040411
Length	21
Mature sequence(if miRNA)	1 - UUUUUUAACAAACGUUUGACC - 21
Stem-loop(if miRNA)	--        CA              CA            AA         U     -UU     -UA UG  A     UUUCU      UUUUUUAA  AACGUUUGACCAUU  UCUUAUUCAAAA  UUUAUGUAA UAUAA   UAUUU   U  UG CUUGA     CAUC   ||||||||  ||||||||||||||  ||||||||||||  ||||||||| |||||   |||||   |  || |||||     |||A   GAAAAAUU  UUGCAAACUGGUGA  AGAAUAAGUUUU  AAAUACAUU AUAUU   AUGAA   A  AC GAAUU     GUAA CU        AG              AC            AA         U     UUU     UAC GU  -     -UCUU
Stem-loop sequence	UUUUUUAACAAACGUUUGACCAUUCAUCUUAUUCAAAAAAUUUAUGUAAUUAUAAUUUAUUUUAUUGUGACUUGAUUUCUCAUCAAAUGUUCUUUAAGCAUGACAUAAGUAUUUUUAUAUUUACAUAAAAAUUUUGAAUAAGACAAGUGGUCAAACGUUGAUUAAAAAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835080.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   ||||||||||||||*|||||= targets:1134   GGUCAAACGUUUGUCAAAAAG   1154 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
AK288488.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   *|||||||||||*|||||||* targets:2554   UGUCAAACGUUUCUUAAAAAU   2574 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090040I02, full insert sequence	NA	coding protein	psRNATarget
CT834259.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||*||||||||= targets:839   GAUCAAACGUUGGUUAAAAAG   859 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||*||||||||= targets:1483   GAUCAAACGUUGGUUAAAAAG   1503 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||*||||||||= targets:1625   GAUCAAACGUUGGUUAAAAAG   1645 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK288459.1	ncRNA:21   CCAGUUUGCAAACAAUUUUUU   1   |*|||||||||||*||||||= targets:277   GAUCAAACGUUUGCUAAAAAG   297 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035G07, full insert sequence	NA	coding protein	psRNATarget