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BaseInfo

ncRNA ID	novel_osa_miR1963
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:21752466-21752664 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR2040390;SRR2040393
Length	24
Mature sequence(if miRNA)	1 - ACGUAGACUAAUGAUAAAACCCAU - 24
Stem-loop(if miRNA)	--                    CC   C     -CCC   A       A     UG   CUA                  C         C     GA   U   ACGUAGACUAAUGAUAAAAC  AUU CAUAA    UGG CUAAUUC UGAGA  AAU   UUUUGGGCCUAAUUAAUC AUGAUUAGC UAUGU  UGC A   ||||||||||||||||||||  ||| |||||    ||| ||||||| |||||  |||   |||||||||||||||||| ||||||||| |||||  |||   UGUAUCUGAUUAUUAUUUUG  UAA GUAUU    AUC GAUUAAG ACUCU  UUA   AAAAUUCGGAUUAAUUAG UAUUAAUCG GUACA  AUG U UU                    AU   C     UACU   -       C     GU   --A                  A         U     -A   A
Stem-loop sequence	ACGUAGACUAAUGAUAAAACCCAUUCCAUAACCCUGGACUAAUUCAUGAGAUGAAUCUAUUUUGGGCCUAAUUAAUCCAUGAUUAGCCUAUGUGAUGCUAUAGUAAACAUGUGCUAAUUAUAGAUUAAUUAGGCUUAAAAAAUUUGUCUCACGAAUUAGCUAUCAUUUAUGCAAUUAGUUUUAUUAUUAGUCUAUGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288236.1	ncRNA:24   UACCCAAAAUAGUAAUCAGAUGCA   1   |||*|||||=|||||||||||||| targets:1883   AUGUGUUUUGUCAUUAGUCUACGU   1906 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   UACCCAAAAUAGUAAUCAGAUGCA   1   ||**|||||||=|||||||||||| targets:1800   AUUUGUUUUAUUAUUAGUCUACGU   1823 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:24   UACCCAAAAUAGUAAUCAGAUGCA   1   ||**|||||=|=|||||||||||| targets:2057   AUUUGUUUUGUUAUUAGUCUACGU   2080 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   UACCCAAAAUAGUAAUCAGAUGCA   1   ||***||||=|=|||||||||||| targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:24   UACCCAAAAUAGUAAUCAGAUGCA   1   ||***||||=|=|||||||||||| targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget