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BaseInfo

ncRNA ID	novel_osa_miR1961
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:3162447-3162560 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555747;SRR2098822;SRR1555751;SRR2099745;SRR1556014;SRR4407956;SRR4407962;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	91 - AAAGAUCAUCUUUAGUCUCGGUUC - 114
Stem-loop(if miRNA)	--                                CAAAAG       G C  AUUU   C   ACCGGGGCUAAAGAUGAUCUUUAGUCCCGGUU      GGUAACG G AU    GAU U   ||||||||||||||||||||||||||||||||      ||||||| | ||    ||| U   UGGCUCUGAUUUCUACUAGAAAUCAGGGCCAA      CCAUUGU U UG    CUG U CU                                ------       G U  -GCC   A
Stem-loop sequence	ACCGGGGCUAAAGAUGAUCUUUAGUCCCGGUUCAAAAGGGUAACGGGCAUAUUUGAUCUUUAGUCCCGGUUUGUGUUACCAACCGGGACUAAAGAUCAUCUUUAGUCUCGGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK120133.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *||||||||||||||||||||||| targets:3587   AAACCGAGACUAAAGAUGAUCUUU   3610 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013027B11, full insert sequence	NA	coding protein	psRNATarget
XM_015786472.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *||||||||||||||||||||||| targets:3587   AAACCGAGACUAAAGAUGAUCUUU   3610 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC4340717), mRNA	putative disease resistance protein RGA4(LOC4340717)	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   ||||||=|||||||||||||=||| targets:1574   GAACCGGGACUAAAGAUGAUUUUU   1597 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288598.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   ||||||=||||||||||||||||* targets:1019   GAACCGGGACUAAAGAUGAUCUUA   1042 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288598.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *|||||=||||||||||*|||||| targets:1083   UAACCGGGACUAAAGAUCAUCUUU   1106 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   ||||||=|||||||*||||||||| targets:2364   GAACCGGGACUAAAAAUGAUCUUU   2387 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
XM_015771984.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *|||||*|||||||||||||=||| targets:2258   CAACCGUGACUAAAGAUGAUUUUU   2281 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group carotenoid cleavage dioxygenase 8 homolog A, chloroplastic (LOC4327933), transcript variant X2, mRNA	carotenoid cleavage dioxygenase 8 homolog A, chloroplastic(LOC4327933)	coding protein	psRNATarget
XM_015772001.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *|||||*|||||||||||||=||| targets:2288   CAACCGUGACUAAAGAUGAUUUUU   2311 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group carotenoid cleavage dioxygenase 8 homolog A, chloroplastic (LOC4327933), transcript variant X4, mRNA	carotenoid cleavage dioxygenase 8 homolog A, chloroplastic(LOC4327933)	coding protein	psRNATarget
XM_015771993.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *|||||*|||||||||||||=||| targets:2297   CAACCGUGACUAAAGAUGAUUUUU   2320 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group carotenoid cleavage dioxygenase 8 homolog A, chloroplastic (LOC4327933), transcript variant X3, mRNA	carotenoid cleavage dioxygenase 8 homolog A, chloroplastic(LOC4327933)	coding protein	psRNATarget
XM_015771974.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *|||||*|||||||||||||=||| targets:2647   CAACCGUGACUAAAGAUGAUUUUU   2670 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group carotenoid cleavage dioxygenase 8 homolog A, chloroplastic (LOC4327933), transcript variant X1, mRNA	carotenoid cleavage dioxygenase 8 homolog A, chloroplastic(LOC4327933)	coding protein	psRNATarget
AK288734.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *|||||=||||||||||*|||||| targets:72   CAACCGGGACUAAAGAUCAUCUUU   95 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
HI404521.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *=|=|*||||||||*||||||||| targets:106   UGAUCCAGACUAAAAAUGAUCUUU   129 Target Full Sequence	2.5	Sequence 2646 from Patent EP2074227	NA	coding protein	psRNATarget
JB164982.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *=|=|*||||||||*||||||||| targets:106   UGAUCCAGACUAAAAAUGAUCUUU   129 Target Full Sequence	2.5	Sequence 2646 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236651.1	ncRNA:24   CUUGGCUCUGAUUUCUACUAGAAA   1   *=|=|*||||||||*||||||||| targets:106   UGAUCCAGACUAAAAAUGAUCUUU   129 Target Full Sequence	2.5	Sequence 2646 from Patent EP2985353	NA	coding protein	psRNATarget