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BaseInfo

ncRNA ID	novel_osa_miR1960
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:1857691-1857849 [-]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849769;SRR1849770;SRR1849775;SRR1849778;SRR1849782;SRR1849783;SRR1849786;SRR1849787;SRR2040383;SRR2040397;SRR2040398;SRR2040403;SRR2040405;SRR2040409
Length	22
Mature sequence(if miRNA)	1 - UCAAGGACCGUAGAAUUGCUCU - 22
Stem-loop(if miRNA)	--                    A  GAUA           CUUUU  C  U      -       C   U        AGGU   AGCAAUUUUACGGUCCUUGA GA    CCAUGAGGUAC     UU UA UGUAAA UUUGGUA CUC UGGUACCU    A   |||||||||||||||||||| ||    |||||||||||     || || |||||| ||||||| ||| ||||||||   UCGUUAAGAUGCCAGGAACU CU    GGUACUCUAUG     AA AU ACAUUU AAACCAU GAG ACCAUGGA    C UC                    C  ----           AUUUU  A  C      U       A   U        AUAU
Stem-loop sequence	AGCAAUUUUACGGUCCUUGAAGAGAUACCAUGAGGUACCUUUUUUCUAUUGUAAAUUUGGUACCUCUUGGUACCUAGGUACUAUAAGGUACCAUGAGAUACCAAAUUUUACACUAAAAUUUUAGUAUCUCAUGGUCCUCAAGGACCGUAGAAUUGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779910.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||=||||||||||||=|||| targets:413   AGAGUAAUUCUACGGUCUUUGA   434 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA	pEARLI1-like lipid transfer protein 1(LOC9272463)	coding protein	psRNATarget
XM_015757723.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||=||||||||||||=|||| targets:422   AGAGUAAUUCUACGGUCUUUGA   443 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
XM_015791346.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||=||||=|||||||||||| targets:2401   AGAGUAAUUUUACGGUCCUUGA   2422 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 10 (LOC4343479), mRNA	cysteine-rich receptor-like protein kinase 10(LOC4343479)	coding protein	psRNATarget
XM_015786627.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   *|||||||||||=||||||||| targets:534   UGAGCAAUUCUAUGGUCCUUGA   555 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA	uncharacterized LOC107281210(LOC107281210)	coding protein	psRNATarget
AK105471.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||||||||||||||||||*| targets:1224   AGAGCAAUUCUACGGUCCUUAA   1245 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||||||||||||||||||*| targets:1232   AGAGCAAUUCUACGGUCCUUAA   1253 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||||||||||||||||||*| targets:1250   AGAGCAAUUCUACGGUCCUUAA   1271 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK072846.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||||||||||||||||||*| targets:1684   AGAGCAAUUCUACGGUCCUUAA   1705 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||||||||||||||||||*| targets:2065   AGAGCAAUUCUACGGUCCUUAA   2086 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||||||||||||||||||*| targets:2109   AGAGCAAUUCUACGGUCCUUAA   2130 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015786027.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   **|||||||||||||||||||| targets:4596   UAAGCAAUUCUACGGUCCUUGA   4617 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget
AK288305.1	ncRNA:22   UCUCGUUAAGAUGCCAGGAACU   1   ||||*||||=|||||||||||| targets:3834   AGAGGAAUUUUACGGUCCUUGA   3855 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget