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BaseInfo

ncRNA ID	novel_osa_miR1955
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:26813006-26813177 [-]
Reference genome	IRGSP-1.0
Source	SRR1849765
Length	24
Mature sequence(if miRNA)	149 - UUUUUUCUUGCAACGUUUGACCAC - 172
Stem-loop(if miRNA)	--     UC           G C                AAAAA    -    UAUUAUUUAUUUUAU     A    CUU     U   UUUUU  UUGCAACGUUU A CACUCGUUUUAUUCAA     UUUG AAAU               UUGUG CUUA   UAUUA U   |||||  ||||||||||| | ||||||||||||||||     |||| ||||               ||||| ||||   |||||   AAAAA  AACGUUGUAAA U GUGAGCAGAAUAAGUU     AAAC UUUA               AACAC GAAU   AUGAU U UC     UU           G A                AAAAA    G    UAUUUUUUGCUUUUU     -    UUC     A
Stem-loop sequence	UUUUUUCUUGCAACGUUUGACCACUCGUUUUAUUCAAAAAAAUUUGAAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUUUAUAGUACUUUAAGCACAAUUUUUCGUUUUUUAUAUUUGCAAAAAAAAUUGAAUAAGACGAGUGAUGAAAUGUUGCAAUUAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100009.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:1038   GUGGUCAAACGUUGCAAGCAAAAA   1061 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:3058   GUGGUCAAACGUUGCAAGCAAAAA   3081 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:4054   GUGGUCAAACGUUGCAAGCAAAAA   4077 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   ||||||||||||||||||*||||| targets:1852   GUGGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:157   GUGGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
HI404548.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:157   GUGGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget
JB165009.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:157   GUGGUCAAAUGUUGCAAGCAAAAA   180 Target Full Sequence	2.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
AK289089.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:1452   GUGGUCAAAUGUUGCAAGCAAAAA   1475 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence	NA	coding protein	psRNATarget
XM_015790883.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||||||||=||||||||*||||| targets:1913   GUGGUCAAAUGUUGCAAGCAAAAA   1936 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA	7-deoxyloganetic acid glucosyltransferase(LOC9267967)	coding protein	psRNATarget
AK102017.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   *|||||||||||||||||*||||| targets:1057   AUGGUCAAACGUUGCAAGCAAAAA   1080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||*||||||||||||||*||||| targets:1978   GUGAUCAAACGUUGCAAGCAAAAA   2001 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:24   CACCAGUUUGCAACGUUCUUUUUU   1   |||*||||||||||||||*||||| targets:2072   GUGAUCAAACGUUGCAAGCAAAAA   2095 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget