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BaseInfo

ncRNA ID	novel_osa_miR1952
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:17410897-17411032 [-]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849773;SRR2040383;SRR2040386;SRR2040388;SRR2040393;SRR2040396;SRR2040397;SRR2040405;SRR1609317
Length	21
Mature sequence(if miRNA)	1 - UUCACGGUUUCCAGGCGAGUU - 21
Stem-loop(if miRNA)	--     A  U     AC         C        C       U  A G      C   A   CUAC   UUUGC UG AAAUC  GAGACGAAU UUUUGAGC UAAUUAG CC U AUUAGC AUA GUG    A   ||||| || |||||  ||||||||| |||||||| ||||||| || | |||||| ||| |||    G   GAGCG AC UUUGG  CUUUGCUUA AAAACUCG AUUAAUU GG A UAAUCG UAU CAU    U UU     G  C     CA         U        U       C  C G      -   A   CCAA
Stem-loop sequence	UUUGCAUGUAAAUCACGAGACGAAUCUUUUGAGCCUAAUUAGUCCAUGAUUAGCCAUAAGUGCUACAGUAACCUACAUAUGCUAAUGACGGCUUAAUUAUGCUCAAAAUAUUCGUUUCACGGUUUCCAGGCGAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK101179.1	ncRNA:21   UUGAGCGGACCUUUGGCACUU   1   ||||||=|||||||||||||= targets:2654   AACUCGUCUGGAAACCGUGAG   2674 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033029D23, full insert sequence	NA	coding protein	psRNATarget
XM_015776798.1	ncRNA:21   UUGAGCGGACCUUUGGCACUU   1   |||||||||||||||||*||= targets:1889   AACUCGCCUGGAAACCGCGAG   1909 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group U11/U12 small nuclear ribonucleoprotein 65 kDa protein (LOC4332713), transcript variant X1, mRNA	U11/U12 small nuclear ribonucleoprotein 65 kDa protein(LOC4332713)	coding protein	psRNATarget
AK241322.1	ncRNA:21   UUGAGCGGACCUUUGGCACUU   1   |||||||=|||||||||*||| targets:2042   AACUCGCUUGGAAACCGCGAA   2062 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065142K05, full insert sequence	NA	coding protein	psRNATarget
XM_015757506.1	ncRNA:21   UUGAGCGGACCUUUGGCACUU   1   |||||||=|||||||||*||| targets:2035   AACUCGCUUGGAAACCGCGAA   2055 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268466 (LOC9268466), transcript variant X1, mRNA	uncharacterized LOC9268466(LOC9268466)	coding protein	psRNATarget
AK288820.1	ncRNA:21   UUGAGCGGACCUUUGGCACUU   1   |||||||||||||||||*||= targets:3004   AACUCGCCUGGAAACCGCGAG   3024 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence	NA	coding protein	psRNATarget