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BaseInfo

ncRNA ID novel_osa_miR1951
Species Oryza sativa
Class miRNA
Genome position Chr2:22168635-22168798 [+]
Reference genome IRGSP-1.0
Source SRR1849765;SRR1849771;SRR2040393;SRR2458631
Length 24
Mature sequence(if miRNA) 141 - GAAUGAUCAAACGUUGGAUAAAAA - 164
Stem-loop(if miRNA) --      -         C         A         U         A   ------------AA    AUUUAUGUCCAGCUUAAA
  UUUAUC AACGUUUGA CAUUCGUUU AUUUAAAAA UUUGUGUAA UAU              AAAU                  G
  |||||| ||||||||| ||||||||| ||||||||| ||||||||| |||              ||||                  A
  AAAUAG UUGCAAACU GUAAGCAGA UAAGUUUUU AAAUACAUU AUA              ACUG                  A
AA      G         A         A         U         G   GUAAAUAAAGUAAC    AACUAAGCAGUAGUUUAU
Stem-loop sequence UUUAUCAACGUUUGACCAUUCGUUUAAUUUAAAAAUUUUGUGUAAAUAUAAAAAUAUUUAUGUCCAGCUUAAAGAAUAUUUGAUGACGAAUCAAGUCACAAUGAAAUAAAUGAUAGUUACAUAAAUUUUUUGAAUAAGACGAAUGAUCAAACGUUGGAUAAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015781389.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  ||||||||||||||||||*|||||
targets:1297   UUUUUAUCCAACGUUUGACCAUUC   1320

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
XM_015781390.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  ||||||||||||||||||*|||||
targets:1297   UUUUUAUCCAACGUUUGACCAUUC   1320

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA uncharacterized LOC4336685(LOC4336685) coding protein psRNATarget
AK103228.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  |||||=||||||||||||*|||||
targets:2644   UUUUUGUCCAACGUUUGACCAUUC   2667

2.5 Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence NA coding protein psRNATarget
XM_015756907.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  ||||||||=|||||||||*|||||
targets:1617   UUUUUAUCUAACGUUUGACCAUUC   1640

2.5 PREDICTED: Oryza sativa Japonica Group probable inactive beta-glucosidase 33 (LOC4347547), mRNA probable inactive beta-glucosidase 33(LOC4347547) coding protein psRNATarget
AK066336.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  ||||||||=|||||||||*|||||
targets:1625   UUUUUAUCUAACGUUUGACCAUUC   1648

2.5 Oryza sativa Japonica Group cDNA clone:J013063O11, full insert sequence NA coding protein psRNATarget
CT829159.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  |||||=||||||||||||*|||||
targets:883   UUUUUGUCCAACGUUUGACCAUUC   906

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence NA coding protein psRNATarget
AK288458.1
ncRNA:24   AAAA---AUAGGUUGCAAACUAGUAAG   1
  *|||---||||||||||||||||=|||
targets:1157   GUUUCUAUAUCCAACGUUUGAUCGUUC   1183

1.5 Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence NA coding protein psRNATarget
AK105698.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  ||||||||*|||||||||*|||||
targets:1113   UUUUUAUCAAACGUUUGACCAUUC   1136

2.5 Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence NA coding protein psRNATarget
AK242718.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  |||*||||||||||||||*||||=
targets:1874   UUUAUAUCCAACGUUUGACCAUUU   1897

2.5 Oryza sativa Japonica Group cDNA, clone: J090043O09, full insert sequence NA coding protein psRNATarget
XM_015779830.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  |||||=||**||||||||||||||
targets:1252   UUUUUGUCGUACGUUUGAUCAUUC   1275

3.0 PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At4g16230-like (LOC107275772), mRNA GDSL esterase/lipase At4g16230-like(LOC107275772) coding protein psRNATarget
XM_015769406.1
ncRNA:24   AAAAAUAGGUUGCAAACUAGUAAG   1
  ||||*|*|||||||||||*|||||
targets:1503   UUUUCAACCAACGUUUGACCAUUC   1526

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278559 (LOC107278559), mRNA uncharacterized LOC107278559(LOC107278559) coding protein psRNATarget
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