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BaseInfo

ncRNA ID	novel_osa_miR1949
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:7402755-7402848 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	23
Mature sequence(if miRNA)	72 - AUAUAUAUGUGGGCAAUGCUAGA - 94
Stem-loop(if miRNA)	--       A  A    UC                  C    CACAC   UAGCAUU CC ACAU  AUAUAGAUGUUAAUGAAU UAGA     A   ||||||| || ||||  |||||||||||||||||| ||||   AUCGUAA GG UGUA  UAUAUCUACAAUUAUUUA AUCU     U AG       C  G    UA                  A    AUAUC
Stem-loop sequence	UAGCAUUACCAACAUUCAUAUAGAUGUUAAUGAAUCUAGACACACAUCUAUAUCUAAAUUUAUUAACAUCUAUAUAUAUGUGGGCAAUGCUAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK102955.1	ncRNA:23   AGAUCGUAACGGGUGUAUAUAUA   1   |||||||||*|||||||*||||| targets:775   UCUAGCAUUUCCCACAUUUAUAU   797 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence	NA	coding protein	psRNATarget
AK107207.1	ncRNA:23   AGAUCGUAACGGGUGUAUAUAUA   1   |||||||||*|||||||*||||| targets:459   UCUAGCAUUACCCACAUUUAUAU   481 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-B10, full insert sequence	NA	coding protein	psRNATarget
CT837839.1	ncRNA:23   AGAUCGUAACGGGUGUAUAUAUA   1   |||||||||*|||||||*||||| targets:961   UCUAGCAUUUCCCACAUUUAUAU   983 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence	NA	coding protein	psRNATarget
AK288786.1	ncRNA:23   AGAUCGUAACGGGUGUAUAUAUA   1   *|||*||||||||||||*||||| targets:3671   CCUAACAUUGCCCACAUUUAUAU   3693 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090069L01, full insert sequence	NA	coding protein	psRNATarget
AK100993.1	ncRNA:23   AGAUCGUAACGGGUGUAUAUAUA   1   |*||*||||||||||||*||||| targets:1169   UAUAACAUUGCCCACAUUUAUAU   1191 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023146F15, full insert sequence	NA	coding protein	psRNATarget