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BaseInfo

ncRNA ID novel_osa_miR1948
Species Oryza sativa
Class miRNA
Genome position Chr2:19503223-19503300 [+]
Reference genome IRGSP-1.0
Source SRR1849765;SRR2040383;SRR2040389;SRR2040395;SRR2040407;SRR2040411
Length 24
Mature sequence(if miRNA) 1 - ACCUAGGACAAGGACAUGGCAUCC - 24
Stem-loop(if miRNA) --AC      CA     A             ----CCA  A
    CUAGGA  AGGAC UGGCAUCCUAUUA       GC A
    ||||||  ||||| |||||||||||||       ||
    GAUCCU  UCCUG ACCGUAGGAUAAU       CG U
GGUA      AC     C             UAAAGCA  C
Stem-loop sequence ACCUAGGACAAGGACAUGGCAUCCUAUUACCAGCAAUCGCACGAAAUUAAUAGGAUGCCACGUCCUCAUCCUAGAUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015787205.1
ncRNA:24   CCUACGGUACAGGAACAGGAUCCA   1
  |*||||||||||||*|||||||||
targets:584   GAAUGCCAUGUCCUCGUCCUAGGU   607

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278395 (LOC107278395), transcript variant X1, mRNA uncharacterized LOC107278395(LOC107278395) coding protein psRNATarget