ncRNA ID | novel_osa_miR1948 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:19503223-19503300 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1849765;SRR2040383;SRR2040389;SRR2040395;SRR2040407;SRR2040411 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACCUAGGACAAGGACAUGGCAUCC - 24 |
Stem-loop(if miRNA) |
--AC      CA     A             ----CCA  A     CUAGGA  AGGAC UGGCAUCCUAUUA       GC A     ||||||  ||||| |||||||||||||       ||     GAUCCU  UCCUG ACCGUAGGAUAAU       CG U GGUA      AC     C             UAAAGCA  C |
Stem-loop sequence | ACCUAGGACAAGGACAUGGCAUCCUAUUACCAGCAAUCGCACGAAAUUAAUAGGAUGCCACGUCCUCAUCCUAGAUGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015787205.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278395 (LOC107278395), transcript variant X1, mRNA | uncharacterized LOC107278395(LOC107278395) | coding protein | psRNATarget |