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BaseInfo

ncRNA ID novel_osa_miR1947
Species Oryza sativa
Class miRNA
Genome position Chr2:10370508-10370588 [+]
Reference genome IRGSP-1.0
Source SRR1849765;SRR1849771;SRR1849775;SRR2040400;SRR2040409;SRR2857734;SRR2857735;SRR2857736
Length 24
Mature sequence(if miRNA) 58 - AACGAUCGGAAACAAUUUGGUACC - 81
Stem-loop(if miRNA) --         A         AUUG      A AAU  CC
  UACCAAAUU UUUUCGAUC    GAUCUA C   GC  A
  ||||||||| |||||||||    |||||| |   ||  U
  AUGGUUUAA AAAGGCUAG    CUAGAU G   CG  C
CC         C         CAAA      C ACU  UC
Stem-loop sequence UACCAAAUUAUUUUCGAUCAUUGGAUCUAACAAUGCCCAUCCUGCUCAGCUAGAUCAAACGAUCGGAAACAAUUUGGUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK240791.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  ||||||||||||||||||||||||
targets:168   GGUACCAAAUUGUUUCCGAUCGUU   191

0.0 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK287529.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  ||||||||||||||||||||||||
targets:168   GGUACCAAAUUGUUUCCGAUCGUU   191

0.0 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
XM_015786123.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  ||||||||||||||||||||||||
targets:657   GGUACCAAAUUGUUUCCGAUCGUU   680

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
XM_015779276.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  ||*||=|||||||||=||||||||
targets:1695   GGGACUAAAUUGUUUUCGAUCGUU   1718

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779283.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  ||*||=|||||||||=||||||||
targets:1688   GGGACUAAAUUGUUUUCGAUCGUU   1711

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779289.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  ||*||=|||||||||=||||||||
targets:1497   GGGACUAAAUUGUUUUCGAUCGUU   1520

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
HI403982.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  *|||||||||*|||||=|||||||
targets:47   AGUACCAAAUCGUUUCUGAUCGUU   70

2.5 Sequence 2107 from Patent EP2074227 NA coding protein psRNATarget
LQ236112.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  *|||||||||*|||||=|||||||
targets:47   AGUACCAAAUCGUUUCUGAUCGUU   70

2.5 Sequence 2107 from Patent EP2985353 NA coding protein psRNATarget
JB164443.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  *|||||||||*|||||=|||||||
targets:47   AGUACCAAAUCGUUUCUGAUCGUU   70

2.5 Sequence 2107 from Patent EP2559767 NA coding protein psRNATarget
XM_015779655.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  *|||=|||||*||||=||||||||
targets:1501   AGUAUCAAAUCGUUUUCGAUCGUU   1524

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA uncharacterized LOC107280684(LOC107280684) coding protein psRNATarget
HI404119.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  |*||||||||*|||||=|||||||
targets:48   GAUACCAAAUCGUUUCUGAUCGUU   71

2.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
JB164580.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  |*||||||||*|||||=|||||||
targets:48   GAUACCAAAUCGUUUCUGAUCGUU   71

2.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
LQ236249.1
ncRNA:24   CCAUGGUUUAACAAAGGCUAGCAA   1
  |*||||||||*|||||=|||||||
targets:48   GAUACCAAAUCGUUUCUGAUCGUU   71

2.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
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