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BaseInfo

ncRNA ID	novel_osa_miR1945
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:7515989-7516157 [-]
Reference genome	IRGSP-1.0
Source	SRR1849765
Length	20
Mature sequence(if miRNA)	150 - UUUUUGACCAACGUUUGACU - 169
Stem-loop(if miRNA)	--       CC           U           C     A         U     -UU     -UA UG GA     UUU       UUUUUGA  AACGUUUGACU UUUGUCUUAUU AAAAA UUUAUGUAA UAUAA   UAUUU   U  A  CUUGA   AUAUC   |||||||  ||||||||||| ||||||||||| ||||| ||||||||| |||||   |||||   |  |  |||||   ||||A   AAAAAUU  UUGCAAACUGG GAGCAGAAUAA UUUUU AAAUAUGUU AUAUU   AUGAA   A  U  GAAUU   UGUAA UG       AU           U           A     A         U     UUU     UAC GU AC     UCU
Stem-loop sequence	UUUUUGACCAACGUUUGACUUUUUGUCUUAUUCAAAAAAUUUAUGUAAUUAUAAUUUAUUUUAUUGAGACUUGAUUUAUAUCAAAUGUUCUUUAAGCAUUGACAUAAGUAUUUUUAUAUUUGUAUAAAAUUUUUAAAUAAGACGAGUGGUCAAACGUUUAUUAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404014.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   |||||||||||||||||||| targets:178   AGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	0.0	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   |||||||||||||||||||| targets:178   AGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	0.0	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
JB164475.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   |||||||||||||||||||| targets:178   AGUCAAACGUUGGUCAAAAA   197 Target Full Sequence	0.0	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015781390.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||||||||||||||||||| targets:1444   GGUCAAACGUUGGUCAAAAA   1463 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||||||||||||||||||| targets:1444   GGUCAAACGUUGGUCAAAAA   1463 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015792366.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||||||||||||||=|||| targets:846   GGUCAAACGUUGGUCGAAAA   865 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271886 (LOC9271886), mRNA	uncharacterized LOC9271886(LOC9271886)	coding protein	psRNATarget
AK287754.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||||||||||||||=|||| targets:854   GGUCAAACGUUGGUCGAAAA   873 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065157N06, full insert sequence	NA	coding protein	psRNATarget
AK105698.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||||||||||||||=|||| targets:1260   GGUCAAACGUUGGUCGAAAA   1279 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-201-D03, full insert sequence	NA	coding protein	psRNATarget
AK288883.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||=||||||||||=||||| targets:1073   GGUUAAACGUUGGUUAAAAA   1092 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079H22, full insert sequence	NA	coding protein	psRNATarget
AK103228.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||||||||||||||=|||= targets:2793   GGUCAAACGUUGGUCGAAAG   2812 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
CT835080.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||||||||||*|||||||| targets:1134   GGUCAAACGUUUGUCAAAAA   1153 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
CT834259.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =*||||||||||||=||||| targets:839   GAUCAAACGUUGGUUAAAAA   858 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA044D20, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =*||||||||||||=||||| targets:1483   GAUCAAACGUUGGUUAAAAA   1502 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =*||||||||||||=||||| targets:1625   GAUCAAACGUUGGUUAAAAA   1644 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK288290.1	ncRNA:20   UCAGUUUGCAACCAGUUUUU   1   =||=|||||||||*|||||| targets:1756   GGUUAAACGUUGGACAAAAA   1775 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget