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BaseInfo

ncRNA ID	novel_osa_miR1940
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:25013720-25013792 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2098823;SRR1556014;SRR4407777;SRR4407954;SRR4407955;SRR4407957
Length	24
Mature sequence(if miRNA)	50 - AAAGAUCGAUCUUUAGUCCCGGAU - 73
Stem-loop(if miRNA)	--           A    CU            A   C   CCGGGACUAAA AUCG  AUCUUUAGUCUC GUU A   ||||||||||| ||||  |||||||||||| ||| A   GGCCCUGAUUU UAGC  UAGAAAUCAGGG CAA A UA           C    --            C   U
Stem-loop sequence	CCGGGACUAAAAAUCGCUAUCUUUAGUCUCAGUUCAAAUAACCGGGACUAAAGAUCGAUCUUUAGUCCCGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288167.1	ncRNA:24   UA--GGCCCUGAUUUCUAGCUAGAAA   1   ||--|||||||||||||||||||||| targets:1764   AUACCCGGGACUAAAGAUCGAUCUUU   1789 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   UA--GGCCCUGAUUUCUAGCUAGAAA   1   ||--|||||||||||||||||||||| targets:1811   AUAACCGGGACUAAAGAUCGAUCUUU   1836 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   UAGGCCCUGAUUUCUAGCUAGAAA   1   |*|||*||||||||||*||||||| targets:626   AACCGUGACUAAAGAUGGAUCUUU   649 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015755273.1	ncRNA:24   UAGGCCCUGAUUUCUAGCUAGAAA   1   ||=-||*||*=||||||||||||| targets:483   AUU-GGUACAGAAGAUCGAUCUUU   505 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4347381), transcript variant X3, mRNA	disease resistance protein RPM1(LOC4347381)	coding protein	psRNATarget
AK121624.1	ncRNA:24   UAGGCCCUGAUUUCUAGCUAGAAA   1   ||=-||*||*=||||||||||||| targets:575   AUU-GGUACAGAAGAUCGAUCUUU   597 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033046D04, full insert sequence	NA	coding protein	psRNATarget
XM_015755270.1	ncRNA:24   UAGGCCCUGAUUUCUAGCUAGAAA   1   ||=-||*||*=||||||||||||| targets:582   AUU-GGUACAGAAGAUCGAUCUUU   604 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4347381), transcript variant X1, mRNA	disease resistance protein RPM1(LOC4347381)	coding protein	psRNATarget
XM_015755271.1	ncRNA:24   UAGGCCCUGAUUUCUAGCUAGAAA   1   ||=-||*||*=||||||||||||| targets:585   AUU-GGUACAGAAGAUCGAUCUUU   607 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4347381), transcript variant X2, mRNA	disease resistance protein RPM1(LOC4347381)	coding protein	psRNATarget