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BaseInfo

ncRNA ID ath-miR850
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:7845707-7845927 [+]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 50 - UAAGAUCCGGACUACAACAAAG - 71
Stem-loop(if miRNA) U    G     G        UUA     ---UA  -UA       C G     U     C  G  U     A   CAC  C      ACUAUA            AAUCAA    U
 UUUA AUAGU UUAUGUAU   UUUCU     CC   UAGAAAC U UCAGC AAGAU CG AC ACAAC AAG   GU UACUCU      UUCUUUUGCGAU      UAGA U
 |||| ||||| ||||||||   |||||     ||   ||||||| | ||||| ||||| || || ||||| |||   || ||||||      ||||||||||||      ||||
 AAGU UAUCA AAUACAUG   AAAGA     GG   AUCUUUG A AGUUG UUCUA GC UG UGUUG UUC   CA AUGAGA      AAGGAAAUGCUA      AUCU C
-    A     A        ---     UACAC  UAA       A G     U     U  -  C     A   AUA  U      AAACAG            ----CA    U
Stem-loop sequence UUUUAGAUAGUGUUAUGUAUUUAUUUCUUACCUAUAGAAACCUGUCAGCUAAGAUCCGGACUACAACAAAGCACGUCUACUCUACUAUAUUCUUUUGCGAUAAUCAAUAGAUUCUUCUAACAUCGUAAAGGAAGACAAAAGAGUAUACAUACUUAGUUGUCGUCGUAUCUUUGUUGAGAAGUUUCUAAAUGGCACAUAGAAAGUACAUAAAACUAUAUGAA

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).