ncRNA ID | ath-miR850 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:7845707-7845927 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 50 - UAAGAUCCGGACUACAACAAAG - 71 |
Stem-loop(if miRNA) |
U    G     G        UUA     ---UA  -UA       C G     U     C  G  U     A   CAC  C      ACUAUA            AAUCAA    U  UUUA AUAGU UUAUGUAU   UUUCU     CC   UAGAAAC U UCAGC AAGAU CG AC ACAAC AAG   GU UACUCU      UUCUUUUGCGAU      UAGA U  |||| ||||| ||||||||   |||||     ||   ||||||| | ||||| ||||| || || ||||| |||   || ||||||      ||||||||||||      ||||  AAGU UAUCA AAUACAUG   AAAGA     GG   AUCUUUG A AGUUG UUCUA GC UG UGUUG UUC   CA AUGAGA      AAGGAAAUGCUA      AUCU C -    A     A        ---     UACAC  UAA       A G     U     U  -  C     A   AUA  U      AAACAG            ----CA    U |
Stem-loop sequence | UUUUAGAUAGUGUUAUGUAUUUAUUUCUUACCUAUAGAAACCUGUCAGCUAAGAUCCGGACUACAACAAAGCACGUCUACUCUACUAUAUUCUUUUGCGAUAAUCAAUAGAUUCUUCUAACAUCGUAAAGGAAGACAAAAGAGUAUACAUACUUAGUUGUCGUCGUAUCUUUGUUGAGAAGUUUCUAAAUGGCACAUAGAAAGUACAUAAAACUAUAUGAA |
1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |