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BaseInfo

ncRNA ID	novel_osa_miR1938
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:28155925-28156105 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849766;SRR1849769;SRR1849770;SRR1849775;SRR1849776;SRR2040380;SRR2040382;SRR2040383;SRR2040385;SRR2040386;SRR2040387;SRR2040388;SRR2040390;SRR2040391;SRR2040392;SRR2040393;SRR2040394;SRR2040395;SRR2040396;SRR2040397;SRR2040398;SRR2040399;SRR2040402;SRR2040403;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2040411;SRR1738221
Length	24
Mature sequence(if miRNA)	158 - AAACGUUGUAAGUAAAAACUCAAA - 181
Stem-loop(if miRNA)	--          A                           AAAAA      AUAAAUAUAAAAAAUGAAAAG     CUUAAAGUACUAUAGAUAAUAAAG   UGAGUUUUUG UUGCAACGUUUGACCACUCGUCUUAUU     AAAUUU                     UUGUG                        U   |||||||||| |||||||||||||||||||||||||||     ||||||                     |||||                        A   ACUCAAAAAU AAUGUUGCAAACUGGUGGGUAGAAUAA     UUUAAA                     AAUUU                        A AA          G                           ----G      ------------------AAA     UAAUAAUAAAUUAAAUAAACACUG
Stem-loop sequence	UGAGUUUUUGAUUGCAACGUUUGACCACUCGUCUUAUUAAAAAAAAUUUAUAAAUAUAAAAAAUGAAAAGUUGUGCUUAAAGUACUAUAGAUAAUAAAGUAAGUCACAAAUAAAUUAAAUAAUAAUUUUAAAAAAAAUUUGAAUAAGAUGGGUGGUCAAACGUUGUAAGUAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||=|||||||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK288652.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||*||||||||||||||*||| targets:1195   UUUGAAUUUUUACUUACAACAUUU   1218 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget