ncRNA ID | novel_osa_miR1937 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr12:4638966-4639076 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1849765;SRR5351738 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GAUAAAGUGGUAGUAACAUUGUUC - 24 |
Stem-loop(if miRNA) |
--                                     AU          --   U   GAUAAAGUGGUAGUAACAUUGUUCACAAAAUUUACAU  AUCUCUUAUA  GUU A   |||||||||||||||||||||||||||||||||||||  ||||||||||  ||| U   CUAUUUCACCAUCAUUGUAACAAGUGUUUUAAAUGUG  UAGAGAAUAU  CAA A GG                                     --          AC   A |
Stem-loop sequence | GAUAAAGUGGUAGUAACAUUGUUCACAAAAUUUACAUAUAUCUCUUAUAGUUUAUAAAACCAUAUAAGAGAUGUGUAAAUUUUGUGAACAAUGUUACUACCACUUUAUCGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CT831299.1 |
|
1.5 | Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence | NA | coding protein | psRNATarget | |||||||||
XM_015782248.1 |
|
2.0 | PREDICTED: Oryza sativa Japonica Group dirigent protein 22-like (LOC107280844), mRNA | dirigent protein 22-like(LOC107280844) | coding protein | psRNATarget |