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BaseInfo

ncRNA ID novel_osa_miR1933
Species Oryza sativa
Class miRNA
Genome position Chr11:24821340-24821454 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1555747;SRR1555749;SRR2097779;SRR2098557;SRR2098560;SRR2098822;SRR2099568;SRR2099745;SRR1556011;SRR1556014;SRR4407775;SRR4407779;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR4407957;SRR4407958;SRR4407959;SRR4407960;SRR1556016;SRR4407961;SRR4407962;SRR1556020
Length 24
Mature sequence(if miRNA) 92 - AAUGUUACUAUUACUUUGUCGGAU - 115
Stem-loop(if miRNA) --   U     CG AUU           C C     G            A  C    U
  CCG UAAAG  A   GUAACAUUAUU A AAAAU UACAUAUCUCUU UA AGUU A
  ||| |||||  |   ||||||||||| | ||||| |||||||||||| || ||||
  GGC GUUUC  U   CAUUGUAAUAA U UUUUA AUGUAUAGAGAG GU UCAA U
UA   U     AU -AU           A A     A            A  A    A
Stem-loop sequence CCGUUAAAGCGAAUUGUAACAUUAUUCACAAAAUGUACAUAUCUCUUAUACAGUUUAUAAACUAUGAGAGAGAUAUGUAAAUUUUAUAAAUAAUGUUACUAUUACUUUGUCGGAU