Search result

BaseInfo

ncRNA ID	novel_osa_miR1930
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:21635876-21635928 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849767;SRR1849771;SRR1849774;SRR2040382;SRR2040383;SRR2040385;SRR2040391;SRR2040394;SRR2040397;SRR2040407;SRR2040408;SRR2040411
Length	24
Mature sequence(if miRNA)	1 - AAGACCGACGGUCAAAUAUUGGAC - 24
Stem-loop(if miRNA)	AAGACCGAC  U          ACA          GG CAAAUAUUGG   C          || ||||||||||   G          UC GUUUGUGACC   G UGUUUUUUU  U          AAA
Stem-loop sequence	AAGACCGACGGUCAAAUAUUGGACACGGAAACCAGUGUUUGUCUUUUUUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288770.1	ncRNA:24   CAGGUUAUAAACUGGCAGCCAGAA   1   |||=|||=||||||||||*||||| targets:2312   GUCUAAUGUUUGACCGUCCGUCUU   2335 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090067O18, full insert sequence	NA	coding protein	psRNATarget
CT827991.1	ncRNA:24   CAGGUUAUAAACUGGCAGCCAGAA   1   ||||||*|||||||||||*||||| targets:659   GUCCAACAUUUGACCGUCCGUCUU   682 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H03, full insert sequence	NA	coding protein	psRNATarget
AK106724.1	ncRNA:24   CAGGUUAUAAACUGGCAGCCAGAA   1   ||||||*|||||||||||*||||| targets:672   GUCCAACAUUUGACCGUCCGUCUU   695 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-114-G11, full insert sequence	NA	coding protein	psRNATarget
AK120358.1	ncRNA:24   CAGGUUAUAAACUGGCAGCCAGAA   1   ||||||*|||||||||||*||||| targets:1068   GUCCAACAUUUGACCGUCUGUCUU   1091 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013067F13, full insert sequence	NA	coding protein	psRNATarget
AK065455.1	ncRNA:24   CA--GGUUAUAAACUGGCAGCCAGAA   1   ||--|||||=||||||||||*||||| targets:2954   GUGCCCAAUGUUUGACCGUCUGUCUU   2979 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013023H14, full insert sequence	NA	coding protein	psRNATarget
AK287701.1	ncRNA:24   CA--GGUUAUAAACUGGCAGCCAGAA   1   ||--|||||=||||||||||*||||| targets:3586   GUACCCAAUGUUUGACCGUCCGUCUU   3611 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065130L06, full insert sequence	NA	coding protein	psRNATarget
XM_015788892.1	ncRNA:24   CA--GGUUAUAAACUGGCAGCCAGAA   1   ||--|||||=||||||||||*||||| targets:3715   GUACCCAAUGUUUGACCGUCCGUCUU   3740 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4340067), mRNA	LRR receptor-like serine/threonine-protein kinase FLS2(LOC4340067)	coding protein	psRNATarget