Search result

BaseInfo

ncRNA ID novel_osa_miR1926
Species Oryza sativa
Class miRNA
Genome position Chr9:1465321-1465427 [-]
Reference genome IRGSP-1.0
Source SRR1743006
Length 24
Mature sequence(if miRNA) 1 - UUGCGAGAUGUAUAAGUUGAAUUU - 24
Stem-loop(if miRNA) --         C            A          CAAAUUU     -AAUAU  G
  AUUCAACUU UACAUCUCGCAA GAAAAAAAAA       GACUG      GU U
  ||||||||| |||||||||||| ||||||||||       |||||      ||
  UAAGUUGAA AUGUAGAGCGUU CUUUUUUUUU       UUGAU      CA U
UU         U            G          ----AAU     GUCGAU  A
Stem-loop sequence AUUCAACUUCUACAUCUCGCAAAGAAAAAAAAACAAAUUUGACUGAAUAUGUGUUAACUAGCUGUAGUUUAAUUUUUUUUUCGUUGCGAGAUGUAUAAGUUGAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015793191.1
ncRNA:24   UUUAAGUUGAAUAUGUAGAGCGUU   1
  ||||||||=||||||||||||=||
targets:453   AAAUUCAAUUUAUACAUCUCGUAA   476

2.5 PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X1, mRNA probable receptor-like protein kinase At1g67000(LOC4327950) coding protein psRNATarget
XM_015793197.1
ncRNA:24   UUUAAGUUGAAUAUGUAGAGCGUU   1
  ||||||||=||||||||||||=||
targets:455   AAAUUCAAUUUAUACAUCUCGUAA   478

2.5 PREDICTED: Oryza sativa Japonica Group probable receptor-like protein kinase At1g67000 (LOC4327950), transcript variant X2, mRNA probable receptor-like protein kinase At1g67000(LOC4327950) coding protein psRNATarget
XM_015792915.1
ncRNA:24   UUUAAGUUGAAUAUGUAGAGCGUU   1
  |||||=|||||*||||||||||||
targets:1888   AAAUUUAACUUCUACAUCUCGCAA   1911

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA UDP-glycosyltransferase 89B1(LOC4345896) coding protein psRNATarget