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BaseInfo

ncRNA ID novel_osa_miR1920
Species Oryza sativa
Class miRNA
Genome position Chr8:8253679-8253852 [-]
Reference genome IRGSP-1.0
Source SRR1743006;SRR2040406
Length 24
Mature sequence(if miRNA) 151 - AUUUUCAUGCCAACGUUUGACUGU - 174
Stem-loop(if miRNA) --A     A  -                        A    UCUUUUU    AUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACGUG
   UUUUC UG CCAACGUUUGACUGUCCGUCUUAU UGAA       UAUA                                    A
   ||||| || |||||||||||||||||||||||| ||||       ||||
   AAAGG AC GGUUGUAAAUUGGCAGGCAGAAUA ACUU       UACU                                    U
AUC     C  A                        A    -UUUUUA    UUUUUUAAUUUUUCUAUUCAGUGCGUAUUUCAUAAU
Stem-loop sequence AUUUUCAUGCCAACGUUUGACUGUCCGUCUUAUAUGAAUCUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACGUGAUUAAUACUUUAUGCGUGACUUAUCUUUUUAAUUUUUUUCAUAUUUUUUUCAAAUAAGACGGACGGUUAAAUGUUGGACACGGAAACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015772621.1
ncRNA:24   UGUCAGUUUGCAACCGUACUUUUA   1
  |||||*||||||||||||||||||
targets:546   ACAGUGAAACGUUGGCAUGAAAAU   569

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA uncharacterized LOC4332894(LOC4332894) coding protein psRNATarget