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BaseInfo

ncRNA ID	novel_osa_miR1901
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:5209985-5210157 [-]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR1849776;SRR2040391;SRR2040402;SRR1738219
Length	24
Mature sequence(if miRNA)	150 - AUUUCCGUGCCAACGUUUGACUGU - 173
Stem-loop(if miRNA)	--A    CG  -                   A    A     UUUUU      UUAGUAUUUUCAUU    -UU      -UA AA     UUA    UUUC  UG CCAACGUUUGACUGUCCGU UUAU UGAAA     UUAUAA              GUUG   AGAUGA   A  CAUAA   A    ||||  || ||||||||||||||||||| |||| |||||     ||||||              ||||   ||||||   |  |||||    AAAG  AC GGUUGCAAACUGACAGGCA AAUA AUUUU     AAUAUU              UAAU   UCUAUU   U  GUAUU   U ACC    AU  A                   G    A     --UUU      ----------UUGU    UUU      CAG GC     UCA
Stem-loop sequence	AUUUCCGUGCCAACGUUUGACUGUCCGUAUUAUAUGAAAUUUUUUUAUAAUUAGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUAAUUAAUACUUUAUGCGUGACUUAUCUUUUUAAUUGUUUUAUAAUUUUUUUAAAUAAGACGGACAGUCAAACGUUGGACAUAGAAACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288529.1	ncRNA:24   UGUCAGUUUGCAACCGUGCCUUUA   1   |||||||||||||||||||||||* targets:217   ACAGUCAAACGUUGGCACGGAAAC   240 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
CT827968.1	ncRNA:24   UGUCAGUUUGCAACC-GUGCCUUUA   1   ||=||||||||||||-||||||||| targets:467   ACGGUCAAACGUUGGACACGGAAAU   491 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN031I05, full insert sequence	NA	coding protein	psRNATarget
AK288264.1	ncRNA:24   UGUCAGUUUGCAACC-GUGCCUUUA   1   ||=||||||||||||-||||||||| targets:99   ACGGUCAAACGUUGGGCACGGAAAU   123 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090016E18, full insert sequence	NA	coding protein	psRNATarget
XM_015759207.1	ncRNA:24   UGUCAGUUUGCAACC-GUGCCUUUA   1   ||=||||||||||||-||||||||| targets:58   ACGGUCAAACGUUGGACACGGAAAU   82 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group piriformospora indica-insensitive protein 2 (LOC4323927), mRNA	piriformospora indica-insensitive protein 2(LOC4323927)	coding protein	psRNATarget
XM_015784718.1	ncRNA:24   UGUCAGUUUGCAACCGUGCCUUUA   1   |||||||||=||||||||*||||| targets:1534   ACAGUCAAAUGUUGGCACAGAAAU   1557 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA	basic 7S globulin(LOC4326528)	coding protein	psRNATarget
AK288770.1	ncRNA:24   UGUCAGUUUGCAACCGUGCCUUUA   1   |||||||||||||||||||*|||* targets:2452   ACAGUCAAACGUUGGCACGCAAAC   2475 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090067O18, full insert sequence	NA	coding protein	psRNATarget
AK288706.1	ncRNA:24   UGU-CAGUUUGCAACC-GUGCCUUUA   1   |||-||||||||||||-||||||||| targets:2716   ACAAGUCAAACGUUGGGCACGGAAAU   2741 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090061L24, full insert sequence	NA	coding protein	psRNATarget
AK287584.1	ncRNA:24   UGUCAGUUUGCAACCGUGCCUUUA   1   ||=|||||||||||*||||||||* targets:1333   ACGGUCAAACGUUGACACGGAAAC   1356 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   UGUCAGUUUGCAACCGUGCCUUUA   1   ||=|||||||||||*||||||||* targets:1356   ACGGUCAAACGUUGACACGGAAAC   1379 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK068180.1	ncRNA:24   UGUCAGUUUGCAACC-GUGCCUUUA   1   |*||*||||||||||-||||||||| targets:458   AAAGACAAACGUUGGACACGGAAAU   482 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013135E14, full insert sequence	NA	coding protein	psRNATarget