Search result

BaseInfo

ncRNA ID	novel_osa_miR1898
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:21915520-21915580 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1298766;SRR2099567;SRR2099568;SRR1556014;SRR4407775;SRR4407779;SRR4407955
Length	24
Mature sequence(if miRNA)	38 - AACUAUAGAUUCUCAGAAGCUGUG - 61
Stem-loop(if miRNA)	--         - CU   -     ---C    U   CAGCUUCUG G  UCU UAGUU    AUUU U   ||||||||| |  ||| |||||    ||||   GUCGAAGAC C  AGA AUCAA    UAAG C GU         U UU   U     UAUA    A
Stem-loop sequence	CAGCUUCUGGCUUCUUAGUUCAUUUUUCAGAAUAUAUAACUAUAGAUUCUCAGAAGCUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288770.1	ncRNA:24   GUGUCGAAGACUCUUAGAUAUCAA   1   ||=|||||||||||||||=||||| targets:1804   CAUAGCUUCUGAGAAUCUGUAGUU   1827 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090067O18, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   GUGUCGAAGACUCUUAGAUAUCAA   1   =|||||||||||||||||=||||| targets:1085   UACAGCUUCUGAGAAUCUGUAGUU   1108 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
AK288737.1	ncRNA:24   GUGUCGAAGACUCUUAGAUAUCAA   1   =|||||||||||||||||=||||| targets:1108   UACAGCUUCUGAGAAUCUGUAGUU   1131 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget
AK289081.1	ncRNA:24   GUGUCGAAGACUCUUAGAUAUCAA   1   ||||||||||*|||||||=||||| targets:2312   CACAGCUUCUAAGAAUCUGUAGUU   2335 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence	NA	coding protein	psRNATarget
XM_015766815.1	ncRNA:24   GUG--UCGAAGACUCUUAGAUAUCAA   1   |||--||||||*|||||*|||||||| targets:85   CACUCAGCUUCCGAGAAGCUAUAGUU   110 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 32 (LOC4326812), transcript variant X2, mRNA	ABC transporter G family member 32(LOC4326812)	coding protein	psRNATarget
CT835327.1	ncRNA:24   GUGUCGAAGACUCUUAGAUAUCAA   1   =*|||||*|||||||*|||||||| targets:368   UCCAGCUGCUGAGAAACUAUAGUU   391 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA011P04, full insert sequence	NA	coding protein	psRNATarget
XM_015768158.1	ncRNA:24   GUGUCGAAGACUCUUAGAUAUCAA   1   =*|||||*|||||||*|||||||| targets:1502   UCCAGCUGCUGAGAAACUAUAGUU   1525 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box protein At3g58530 (LOC9267245), transcript variant X1, mRNA	F-box protein At3g58530(LOC9267245)	coding protein	psRNATarget
XM_015768159.1	ncRNA:24   GUGUCGAAGACUCUUAGAUAUCAA   1   =*|||||*|||||||*|||||||| targets:1623   UCCAGCUGCUGAGAAACUAUAGUU   1646 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box protein At3g58530 (LOC9267245), transcript variant X2, mRNA	F-box protein At3g58530(LOC9267245)	coding protein	psRNATarget