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BaseInfo

ncRNA ID	novel_osa_miR1895
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:10031866-10031973 [+]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR1738222
Length	24
Mature sequence(if miRNA)	1 - AAGAGAUUUUGGUUGGAUGUGACA - 24
Stem-loop(if miRNA)	--A  A                       A   -U  C            CAAG    AG GAUUUUGGUUGGAUGUGACACAU CUG  UA AAUGAAUCUGGA    C    || ||||||||||||||||||||||| |||  || ||||||||||||    U    UC CUAAAACCAACCUAUACUGUGUA GAU  AU UUGCUUAGACCU    U UAC  C                       A   UC  A            AUCU
Stem-loop sequence	AAGAGAUUUUGGUUGGAUGUGACACAUACUGUUACAAUGAAUCUGGACAAGCUUUCUAUCCAGAUUCGUUAUACUUAGAAUGUGUCAUAUCCAACCAAAAUCCCUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835671.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   |||||=|||=|||||||||||||| targets:1176   UGUCAUAUCUAACCAAAAUCUCUU   1199 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128D09, full insert sequence	NA	coding protein	psRNATarget
XM_015787746.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   ||||||||||*||||||||||||| targets:2306   UGUCACAUCCCACCAAAAUCUCUU   2329 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC4340709), mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC4340709)	coding protein	psRNATarget
AK288631.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   ||||||||||||||||||||*||| targets:1341   UGUCACAUCCAACCAAAAUCCCUU   1364 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK288762.1	ncRNA:24   ACA--GUGUAGGUUGGUUUUAGAGAA   1   |||--|||||||||=||||||||||| targets:786   UGUUUCACAUCCAAUCAAAAUCUCUU   811 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence	NA	coding protein	psRNATarget
AK242470.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   |||||=|||||*|||||||||||| targets:911   UGUCAUAUCCAUCCAAAAUCUCUU   934 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080302H11, full insert sequence	NA	coding protein	psRNATarget
AK288255.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   *|||||||||||||||||||*||| targets:838   AGUCACAUCCAACCAAAAUCACUU   861 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090015K18, full insert sequence	NA	coding protein	psRNATarget
AK288871.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   ||||*||||||*|||||||||||| targets:6585   UGUCUCAUCCAUCCAAAAUCUCUU   6608 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090078G09, full insert sequence	NA	coding protein	psRNATarget
AK288587.1	ncRNA:24   ACAGUGUAGGUUGGUUUUAGAGAA   1   *|||*=||||||||||||||*||| targets:2191   GGUCUUAUCCAACCAAAAUCCCUU   2214 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090050A10, full insert sequence	NA	coding protein	psRNATarget