Search result

BaseInfo

ncRNA ID	novel_osa_miR1893
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:20406795-20406887 [-]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR1738227
Length	24
Mature sequence(if miRNA)	70 - ACACAGCGGUACAAGUUUAGAGAC - 93
Stem-loop(if miRNA)	--  A        CAA     --   A  ------         C   ACUG   AC CAGCGGUA   GUUUA  GAG CC      GGUUACGAA UUU    A   || ||||||||   |||||  ||| ||      ||||||||| |||   UG GUUGUCAU   UAAGU  CUC GG      UCAAUGUUU AAA    A CU  C        ---     AA   C  UACAAA         A   AAAG
Stem-loop sequence	ACACAGCGGUACAAGUUUAGAGACCGGUUACGAACUUUACUGAAGAAAAAAAUUUGUAACUAAACAUGGCCUCAAUGAAUUACUGUUGCGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015788826.1	ncRNA:24   CAGAGAUUUGAACAUGGCGACACA   1   |||||||||||||||||||||||| targets:762   GUCUCUAAACUUGUACCGCUGUGU   785 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278163 (LOC107278163), mRNA	uncharacterized LOC107278163(LOC107278163)	coding protein	psRNATarget
AK064681.1	ncRNA:24   CAGAGAUUUGAACAUGGCGACACA   1   |||*|||||||||||||||||||| targets:1239   GUCCCUAAACUUGUACCGCUGUGU   1262 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-116-A05, full insert sequence	NA	coding protein	psRNATarget
XM_015783615.1	ncRNA:24   CAGAGAUUUGAACAUGGCGACACA   1   |||*|||||||||||||||||||| targets:1233   GUCCCUAAACUUGUACCGCUGUGU   1256 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase At2g31550 (LOC4339062), mRNA	GDSL esterase/lipase At2g31550(LOC4339062)	coding protein	psRNATarget
AK241060.1	ncRNA:24   CAGAGAUUUGAACAUGGCGACACA   1   |||*||||||||||||||=||||| targets:481   GUCCCUAAACUUGUACCGUUGUGU   504 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065064N07, full insert sequence	NA	coding protein	psRNATarget
AK288437.1	ncRNA:24   CAGAGAUUUGAACAUGGCGACACA   1   |||*|||||=||||||||=||||| targets:985   GUCCCUAAAUUUGUACCGUUGUGU   1008 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034B12, full insert sequence	NA	coding protein	psRNATarget
XM_015778755.1	ncRNA:24   CAGAGAUUUGAACAUGGCGACACA   1   |||*|||||=||||||||=||||| targets:1395   GUCCCUAAAUUUGUACCGUUGUGU   1418 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein unc-45 homolog A (LOC4336995), mRNA	protein unc-45 homolog A(LOC4336995)	coding protein	psRNATarget