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BaseInfo

ncRNA ID novel_osa_miR1890
Species Oryza sativa
Class miRNA
Genome position Chr4:4250050-4250100 [-]
Reference genome IRGSP-1.0
Source SRR1743006;SRR1738241
Length 24
Mature sequence(if miRNA) 28 - AAGAACAACCGGGACUAAAGAUCU - 51
Stem-loop(if miRNA) --              C       C
  AAGAACAACCGGGA UAAAGAU U
  |||||||||||||| ||||||| U
  UUCUUGUUGGCCCU AUUUCUA A
CA              C       U
Stem-loop sequence AAGAACAACCGGGACUAAAGAUCUUAUAUCUUUACUCCCGGUUGUUCUUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288859.1
ncRNA:24   UCUA--GAAAUCAGGGCCAACAAGAA   1
  ||||--|||||*|||||||||||||*
targets:2305   AGAUAUCUUUACUCCCGGUUGUUCUC   2330

2.0 Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence NA coding protein psRNATarget
AK288544.1
ncRNA:24   UCU--AGAAAUCAGGGCCAACAAGAA   1
  |||--||||||*|||||||||||||*
targets:1854   AGAAAUCUUUACUCCCGGUUGUUCUC   1879

2.0 Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence NA coding protein psRNATarget