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BaseInfo

ncRNA ID	novel_osa_miR1887
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:22569839-22569915 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	54 - GCGGUCAGACCGGUGGUACAGAGA - 77
Stem-loop(if miRNA)	--G     A      U       A -A     A          CGGUC GACCGG GGUACAG G  CGGUC GACCGGC    ||||| |||||| ||||||| |  ||||| ||||||C    GCCAG UUGGCU CCAUGUC C  GCCAG CUGGCCC CCG     A      -       A CG     A
Stem-loop sequence	GCGGUCAGACCGGUGGUACAGAGACGGUCAGACCGGCCCCCGGUCAGACCGGCCACUGUACCUCGGUUAGACCGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109269.1	ncRNA:24   AGAGACA-UGGUGGCCAGACUGGCG   1   ||-||||-=|||||||||||||||| targets:420   UC-CUGUCGCCACCGGUCUGACCGC   443 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-188-A04, full insert sequence	NA	coding protein	psRNATarget
AK109269.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   ||*|**|=||=||||||||||||| targets:466   UCGCGAUGCCGCCGGUCUGACCGC   489 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-188-A04, full insert sequence	NA	coding protein	psRNATarget
AK318567.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   |=|*|||||==||||||||||||* targets:130   UUUGUGUACUGCCGGUCUGACCGG   153 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J080056I15, full insert sequence	NA	coding protein	psRNATarget
HI404109.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   *|||-||=||=||||||||||||* targets:43   GCUC-GUGCCGCCGGUCUGACCGG   65 Target Full Sequence	3.0	Sequence 2234 from Patent EP2074227	NA	coding protein	psRNATarget
JB164570.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   *|||-||=||=||||||||||||* targets:43   GCUC-GUGCCGCCGGUCUGACCGG   65 Target Full Sequence	3.0	Sequence 2234 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236239.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   *|||-||=||=||||||||||||* targets:43   GCUC-GUGCCGCCGGUCUGACCGG   65 Target Full Sequence	3.0	Sequence 2234 from Patent EP2985353	NA	coding protein	psRNATarget
AK288809.1	ncRNA:24   AGAGACA-UGGUGGCCAGACUGGCG   1   *=**|||-|||=||||||||||||| targets:764   CUGAUGUCACCGCCGGUCUGACCGC   788 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090071N20, full insert sequence	NA	coding protein	psRNATarget
LQ236037.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   *|*|**|=||=||||||||||||| targets:30   CCGCGAUGCCGCCGGUCUGACCGC   53 Target Full Sequence	3.0	Sequence 2032 from Patent EP2985353	NA	coding protein	psRNATarget
HI403907.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   *|*|**|=||=||||||||||||| targets:30   CCGCGAUGCCGCCGGUCUGACCGC   53 Target Full Sequence	3.0	Sequence 2032 from Patent EP2074227	NA	coding protein	psRNATarget
JB164368.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   *|*|**|=||=||||||||||||| targets:30   CCGCGAUGCCGCCGGUCUGACCGC   53 Target Full Sequence	3.0	Sequence 2032 from Patent EP2559767	NA	coding protein	psRNATarget
AK288744.1	ncRNA:24   AGAGACAUGGUGGCCAGACUGGCG   1   *|****||||=||||||||||||* targets:3049   GCCACAUACCGCCGGUCUGACCGG   3072 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090064F20, full insert sequence	NA	coding protein	psRNATarget