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BaseInfo

ncRNA ID novel_osa_miR1883
Species Oryza sativa
Class miRNA
Genome position Chr4:25496335-25496410 [+]
Reference genome IRGSP-1.0
Source SRR1743006
Length 21
Mature sequence(if miRNA) 1 - UCUAACUUUUUUCAUCACAUC - 21
Stem-loop(if miRNA) UCUAACU      -                    CAU
       UUUUUC AUCACAUCAAAACUUUCCUA   A
       |||||| ||||||||||||||||||||   C
       AAAAAG UAGUGUAGUUUUGAAAGGAU   A
GAAAGUU      A                    UAG
Stem-loop sequence UCUAACUUUUUUCAUCACAUCAAAACUUUCCUACAUACAGAUUAGGAAAGUUUUGAUGUGAUAGAAAAAUUGAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015759918.1
ncRNA:21   CUACACUACUUUUUUCAAUCU   1
  *=|*|||*|||||||||||||
targets:1955   AGUUUGAAGAAAAAAGUUAGA   1975

2.0 PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g59190 (LOC9271146), mRNA F-box/LRR-repeat protein At3g59190(LOC9271146) coding protein psRNATarget
CT835403.1
ncRNA:21   CUACACUACUUUUUUCAAUCU   1
  *=|*|||*|||||||||||||
targets:1150   AGUUUGAAGAAAAAAGUUAGA   1170

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119N11, full insert sequence NA coding protein psRNATarget