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BaseInfo

ncRNA ID	novel_osa_miR1882
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:14916853-14916909 [-]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR2040382;SRR2040383;SRR2040384;SRR2040388;SRR2040395;SRR2040402;SRR2040406;SRR2040408;SRR2040409;SRR2857731
Length	24
Mature sequence(if miRNA)	34 - AUCAUAGUACAAUAAAUCUGGACA - 57
Stem-loop(if miRNA)	--             A   C    CAUA   AUCAUAGUACAAU AAU UGGA    C   ||||||||||||| ||| ||||    C   UAGUAUCAUGUUA UUA ACCU    G UA             C   A    AUCU
Stem-loop sequence	AUCAUAGUACAAUAAAUCUGGACAUACCGUCUAUCCAAAUUCAUUGUACUAUGAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015776920.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   |||=||||||||||||||||*||| targets:1   UGUUCAGAUUUAUUGUACUAGGAU   24 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group fasciclin-like arabinogalactan protein 16 (LOC4334368), mRNA	fasciclin-like arabinogalactan protein 16(LOC4334368)	coding protein	psRNATarget
XM_015789172.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||=||||||||*|||||||||| targets:1571   UGUCUAGAUUUAUAGUACUAUGAU   1594 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278291 (LOC107278291), transcript variant X1, mRNA	uncharacterized LOC107278291(LOC107278291)	coding protein	psRNATarget
XM_015789181.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||=||||||||*|||||||||| targets:1475   UGUCUAGAUUUAUAGUACUAUGAU   1498 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278291 (LOC107278291), transcript variant X2, mRNA	uncharacterized LOC107278291(LOC107278291)	coding protein	psRNATarget
XM_015776443.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||||||||||||||||||*||* targets:1382   UGUCCAGAUUUAUUGUACUAGGAG   1405 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327623 (LOC4327623), mRNA	uncharacterized LOC4327623(LOC4327623)	coding protein	psRNATarget
AK068691.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||=|||||||||*||||||||* targets:450   UGUCUAGAUUUAUUAUACUAUGAA   473 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013162E13, full insert sequence	NA	coding protein	psRNATarget
HI403973.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||=|||||*||||||||||||* targets:84   UGUCUAGAUUCAUUGUACUAUGAA   107 Target Full Sequence	2.0	Sequence 2098 from Patent EP2074227	NA	coding protein	psRNATarget
JB164434.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||=|||||*||||||||||||* targets:84   UGUCUAGAUUCAUUGUACUAUGAA   107 Target Full Sequence	2.0	Sequence 2098 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236103.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||=|||||*||||||||||||* targets:84   UGUCUAGAUUCAUUGUACUAUGAA   107 Target Full Sequence	2.0	Sequence 2098 from Patent EP2985353	NA	coding protein	psRNATarget
HI404290.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||||||||*|||||||||*||| targets:54   UGUCCAGAUUCAUUGUACUAGGAU   77 Target Full Sequence	2.5	Sequence 2415 from Patent EP2074227	NA	coding protein	psRNATarget
JB164751.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||||||||*|||||||||*||| targets:54   UGUCCAGAUUCAUUGUACUAGGAU   77 Target Full Sequence	2.5	Sequence 2415 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236420.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||||||||*|||||||||*||| targets:54   UGUCCAGAUUCAUUGUACUAGGAU   77 Target Full Sequence	2.5	Sequence 2415 from Patent EP2985353	NA	coding protein	psRNATarget
JB164618.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||||||||*|||||||||*||| targets:52   UGUCCAGAUUCAUUGUACUAGGAU   75 Target Full Sequence	2.5	Sequence 2282 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236287.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||||||||*|||||||||*||| targets:52   UGUCCAGAUUCAUUGUACUAGGAU   75 Target Full Sequence	2.5	Sequence 2282 from Patent EP2985353	NA	coding protein	psRNATarget
HI404157.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   ||||||||||*|||||||||*||| targets:52   UGUCCAGAUUCAUUGUACUAGGAU   75 Target Full Sequence	2.5	Sequence 2282 from Patent EP2074227	NA	coding protein	psRNATarget
AK241651.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   |||==|||||*||||||||||||* targets:1016   UGUUUAGAUUCAUUGUACUAUGAA   1039 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J065191A02, full insert sequence	NA	coding protein	psRNATarget
XM_015772668.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   |||==|||||||||||||||*||* targets:25   UGUUUAGAUUUAUUGUACUACGAA   48 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitotic-spindle organizing protein 1B-like (LOC107277991), mRNA	mitotic-spindle organizing protein 1B-like(LOC107277991)	coding protein	psRNATarget
XM_015759864.1	ncRNA:24   ACAGGUCUAAAUAACAUGAUACUA   1   |||==|||||||||||||||*||* targets:25   UGUUUAGAUUUAUUGUACUACGAA   48 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitotic-spindle organizing protein 1B (LOC4333190), mRNA	mitotic-spindle organizing protein 1B(LOC4333190)	coding protein	psRNATarget