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BaseInfo

ncRNA ID novel_osa_miR1881
Species Oryza sativa
Class miRNA
Genome position Chr11:2523243-2523315 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1555749;SRR2097779;SRR2098557;SRR2098560;SRR1555751;SRR2099567;SRR2099745;SRR2099746;SRR2458631;SRR1556011;SRR1556014;SRR4407779;SRR4407953;SRR4407956;SRR4407957;SRR1556016;SRR1556018;SRR1654490;SRR1654491;SRR1460507
Length 24
Mature sequence(if miRNA) 50 - CUAGAUUUGUUUAUUUUGGGACGG - 73
Stem-loop(if miRNA) --A            A            UU     U
   UCCCAAAAUGAA AAAUCUAGUACA  AUGUG U
   |||||||||||| ||||||||||||  ||||| U
   AGGGUUUUAUUU UUUAGAUCAUGU  UAUAC G
GGC            G            CC     A
Stem-loop sequence AUCCCAAAAUGAAAAAAUCUAGUACAUUAUGUGUUUGACAUAUCCUGUACUAGAUUUGUUUAUUUUGGGACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK120132.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||||||||*||*||||||||||||
targets:1847   CCGUCCCAUAAAAAACAAAUCUAG   1870

2.5 Oryza sativa Japonica Group cDNA clone:J013027B10, full insert sequence NA coding protein psRNATarget
XM_015780717.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||||||||*||*||||||||||||
targets:1848   CCGUCCCAUAAAAAACAAAUCUAG   1871

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X5, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780715.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||||||||*||*||||||||||||
targets:1925   CCGUCCCAUAAAAAACAAAUCUAG   1948

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X3, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780713.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||||||||*||*||||||||||||
targets:1942   CCGUCCCAUAAAAAACAAAUCUAG   1965

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X1, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780718.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||||||||*||*||||||||||||
targets:1955   CCGUCCCAUAAAAAACAAAUCUAG   1978

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X6, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780716.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||||||||*||*||||||||||||
targets:2138   CCGUCCCAUAAAAAACAAAUCUAG   2161

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X4, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015780714.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||||||||*||*||||||||||||
targets:2155   CCGUCCCAUAAAAAACAAAUCUAG   2178

2.5 PREDICTED: Oryza sativa Japonica Group F-box/kelch-repeat protein At1g67480 (LOC4335630), transcript variant X2, mRNA F-box/kelch-repeat protein At1g67480(LOC4335630) coding protein psRNATarget
XM_015771059.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  |=||||||*||*||||||||||||
targets:3087   CUGUCCCAUAAAAAACAAAUCUAG   3110

2.5 PREDICTED: Oryza sativa Japonica Group SART-1 family protein DOT2 (LOC4329455), transcript variant X2, mRNA SART-1 family protein DOT2(LOC4329455) coding protein psRNATarget
AK288920.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  =|*||||=|||*||||||||||||
targets:853   UCAUCCCGAAAAAAACAAAUCUAG   876

2.5 Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence NA coding protein psRNATarget
CT834276.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  ||*|||||*||*||||||||||||
targets:1752   CCAUCCCAUAAAAAACAAAUCUAG   1775

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110F09, full insert sequence NA coding protein psRNATarget
CT835495.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  =**||||||||*|||||||||||*
targets:635   UACUCCCAAAAAAAACAAAUCUAA   658

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN069D03, full insert sequence NA coding protein psRNATarget
XM_015756492.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  |*||=||||*|||*||||||||||
targets:323   CGGUUCCAACAUACACAAAUCUAG   346

2.5 PREDICTED: Oryza sativa Japonica Group auxin-responsive protein SAUR41 (LOC9270862), mRNA auxin-responsive protein SAUR41(LOC9270862) coding protein psRNATarget
XM_015775913.1
ncRNA:24   GGCAGGGUUUUAUUUGUUUAGAUC   1
  =*||=*||||||||||*|||||||
targets:739   UAGUUGCAAAAUAAACCAAUCUAG   762

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4334008 (LOC4334008), mRNA uncharacterized LOC4334008(LOC4334008) coding protein psRNATarget
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