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BaseInfo

ncRNA ID	novel_osa_miR1880
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:8338181-8338363 [+]
Reference genome	IRGSP-1.0
Source	SRR1743006
Length	24
Mature sequence(if miRNA)	160 - GCUGCCUCCUGAUGAGCGUGUGGA - 183
Stem-loop(if miRNA)	--U    A                                                                        A   G  A GAC    GCAC CUCGUUAGGAGGCAGCUUUGGUGGCCAUUGGAGAGCUUCGUCACCGCUUUGAUGAGGAGUUGGAGCUCGUCG CGG UG C   G    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |    UGUG GAGUAGUCCUCCGUCGAAACCACCGGUAACCUCUUGAAGCAGUGGUGAAACUACUCCUCAACCUCGAGCGGC GCC AC G   A AGG    C                                                                        G   A  - GUA
Stem-loop sequence	UGCACACUCGUUAGGAGGCAGCUUUGGUGGCCAUUGGAGAGCUUCGUCACCGCUUUGAUGAGGAGUUGGAGCUCGUCGACGGGUGACGACGAAUGGCAACCGGCGGCGAGCUCCAACUCCUCAUCAAAGUGGUGACGAAGUUCUCCAAUGGCCACCAAAGCUGCCUCCUGAUGAGCGUGUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HQ858827.1	ncRNA:24   AGGUGUGCGAGUAGUCCUCCGUCG   1   ***||||||*||||||||||*||| targets:323   GGAACACGCACAUCAGGAGGAAGC   346 Target Full Sequence	2.5	Oryza sativa Japonica Group isolate UT1325 MYB transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
EF576168.1	ncRNA:24   AGGUGUGCGAGUAGUCCUCCGUCG   1   ***||||||*||||||||||*||| targets:394   GGAACACGCACAUCAGGAGGAAGC   417 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) clone VI-F6 myb related protein hv1 mRNA, partial cds	NA	coding protein	psRNATarget
AK104457.1	ncRNA:24   AGGUGUGCGAGUAGUCCUCCGUCG   1   ***||||||*||||||||||*||| targets:416   GGAACACGCACAUCAGGAGGAAGC   439 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-301-B02, full insert sequence	NA	coding protein	psRNATarget
AK111966.1	ncRNA:24   AGGUGUGCGAGUAGUCCUCCGUCG   1   ***||||||*||||||||||*||| targets:418   GGAACACGCACAUCAGGAGGAAGC   441 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-202-H01, full insert sequence	NA	coding protein	psRNATarget
AK104408.1	ncRNA:24   AGGUGUGCGAGUAGUCCUCCGUCG   1   ***||||||*||||||||||*||| targets:416   GGAACACGCACAUCAGGAGGAAGC   439 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-203-E04, full insert sequence	NA	coding protein	psRNATarget
XM_015756536.1	ncRNA:24   AGGUGUGCGAGUAGUCCUCCGUCG   1   ***||||||*||||||||||*||| targets:984   GGAACACGCACAUCAGGAGGAAGC   1007 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group myb-related protein Hv1 (LOC4347711), mRNA	myb-related protein Hv1(LOC4347711)	coding protein	psRNATarget