Search result

BaseInfo

ncRNA ID	novel_osa_miR1876
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:26399837-26399926 [-]
Reference genome	IRGSP-1.0
Source	SRR1743006
Length	24
Mature sequence(if miRNA)	67 - GCAUUGUCUGCAUUUAUAUAGAUG - 90
Stem-loop(if miRNA)	--GC      UG                       C  U    AU     AUUGUC  CAUUUAUAUAGAUGCUAAUGAAU UA AUAU  A     ||||||  ||||||||||||||||||||||| || ||||     UAACGG  GUAGGUAUAUCUACGAUUACUUA AU UGUA  A AUCA      GU                       A  C    AU
Stem-loop sequence	GCAUUGUCUGCAUUUAUAUAGAUGCUAAUGAAUCUAUAUAUAUAAUAAUGUCUAAAUUCAUUAGCAUCUAUAUGGAUGUGGGCAAUACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK066822.1	ncRNA:24   GUAGAUAUAUUUACGUCUGUUACG   1   =|||||||||||||=||||||||| targets:554   UAUCUAUAUAAAUGUAGACAAUGC   577 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013077F20, full insert sequence	NA	coding protein	psRNATarget
XM_015794006.1	ncRNA:24   GUAGAUAUAUUUACGUCUGUUACG   1   =|||||||||||||=||||||||| targets:1241   UAUCUAUAUAAAUGUAGACAAUGC   1264 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X5, mRNA	uncharacterized protein At4g15970(LOC4346122)	coding protein	psRNATarget
XM_015794003.1	ncRNA:24   GUAGAUAUAUUUACGUCUGUUACG   1   =|||||||||||||=||||||||| targets:1316   UAUCUAUAUAAAUGUAGACAAUGC   1339 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X2, mRNA	uncharacterized protein At4g15970(LOC4346122)	coding protein	psRNATarget
XM_015794005.1	ncRNA:24   GUAGAUAUAUUUACGUCUGUUACG   1   =|||||||||||||=||||||||| targets:1361   UAUCUAUAUAAAUGUAGACAAUGC   1384 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X4, mRNA	uncharacterized protein At4g15970(LOC4346122)	coding protein	psRNATarget
XM_015794002.1	ncRNA:24   GUAGAUAUAUUUACGUCUGUUACG   1   =|||||||||||||=||||||||| targets:1373   UAUCUAUAUAAAUGUAGACAAUGC   1396 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X1, mRNA	uncharacterized protein At4g15970(LOC4346122)	coding protein	psRNATarget
XM_015794004.1	ncRNA:24   GUAGAUAUAUUUACGUCUGUUACG   1   =|||||||||||||=||||||||| targets:1389   UAUCUAUAUAAAUGUAGACAAUGC   1412 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein At4g15970 (LOC4346122), transcript variant X3, mRNA	uncharacterized protein At4g15970(LOC4346122)	coding protein	psRNATarget
XM_015777008.1	ncRNA:24   GUAGAUAUAUUUACGUCUGUUACG   1   =||**||||=||||=||||||||| targets:1440   UAUACAUAUGAAUGUAGACAAUGC   1463 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4331744 (LOC4331744), mRNA	uncharacterized LOC4331744(LOC4331744)	coding protein	psRNATarget