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BaseInfo

ncRNA ID	novel_osa_miR1875
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:32921792-32922002 [+]
Reference genome	IRGSP-1.0
Source	SRR1743006
Length	24
Mature sequence(if miRNA)	188 - AACGACGUUAAAUAUUUAGGGACG - 211
Stem-loop(if miRNA)	--          C     AC    G  -C               A   A     C     C     AUU   GUAAUUAUUAAUUCUUUUCAAUUCAUUGUUAAAU   UCCCUAAAUA UUGAC  UGUU AC  UUUUUAAACAUGUUU ACC UUCGU UUAUU AAAAA   UAA                                  A   |||||||||| |||||  |||| ||  ||||||||||||||| ||| ||||| ||||| |||||   |||   AGGGAUUUAU AAUUG  GCAA UG  AAAAAUUUGUACAAA UGG AAGCA AAUAA UUUUU   AAU                                  U GC          A     CA    A  AA               C   C     A     A     GAA   ACUUUAUAUAUUUUGAUAUACAUAUCUAUUUUCA
Stem-loop sequence	UCCCUAAAUACUUGACACUGUUGACCUUUUUAAACAUGUUUAACCAUUCGUCUUAUUCAAAAAAUUUAAGUAAUUAUUAAUUCUUUUCAAUUCAUUGUUAAAUAUACUUUUAUCUAUACAUAUAGUUUUAUAUAUUUCAUAAAAGUUUUUAAAUAAAACGAACGGUCAAACAUGUUUAAAAAAAGUAAACGACGUUAAAUAUUUAGGGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288341.1	ncRNA:24   GCAGGGAUUUAUAAAUUGCAGCAA   1   |||==||||||||||||||||||| targets:146   CGUUUCUAAAUAUUUAACGUCGUU   169 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090023G20, full insert sequence	NA	coding protein	psRNATarget
XM_015763948.1	ncRNA:24   GCAGGGAUUUAUAAAUUGCAGCAA   1   =|||=||||||||||||||*|||| targets:1393   UGUCUCUAAAUAUUUAACGCCGUU   1416 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable inactive methyltransferase Os04g0175900 (LOC4351737), mRNA	probable inactive methyltransferase Os04g0175900(LOC4351737)	coding protein	psRNATarget
XM_015755113.1	ncRNA:24   GCAGGGAUUUAUAAAUUGCAGCAA   1   |*|||||||||||||||||*|||| targets:198   CUUCCCUAAAUAUUUAACGCCGUU   221 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group zinc-finger homeodomain protein 9 (LOC4347054), mRNA	zinc-finger homeodomain protein 9(LOC4347054)	coding protein	psRNATarget
AK289103.1	ncRNA:24   GCAGGGAUUUAUAAAUUGCAGCAA   1   |*|||||||||||||||||*|||| targets:204   CUUCCCUAAAUAUUUAACGCCGUU   227 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096G10, full insert sequence	NA	coding protein	psRNATarget
XM_015787231.1	ncRNA:24   GCAGGGAUUUAUAAAUUGCAGCAA   1   ***||||||||||||||||*|||| targets:582   AUCCCCUAAAUAUUUAACGCCGUU   605 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339918 (LOC4339918), mRNA	uncharacterized LOC4339918(LOC4339918)	coding protein	psRNATarget
AK108096.1	ncRNA:24   GCAGGGAUUUAUAAAUUGCAGCAA   1   ***||||||||||||||||*|||| targets:578   AUCCCCUAAAUAUUUAACGCCGUU   601 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-139-A08, full insert sequence	NA	coding protein	psRNATarget