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BaseInfo

ncRNA ID	novel_osa_miR1873
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:25201745-25201844 [+]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR5049788
Length	24
Mature sequence(if miRNA)	77 - GUAAAUGUGAGAAAUGCUAGAAUG - 100
Stem-loop(if miRNA)	--                       C          A        CAUAU   UUCUAGCAUUUCUCACAUUUAUA UGAUGUUAAU AAUCUAGA     A   ||||||||||||||||||||||| |||||||||| ||||||||   AAGAUCGUAAAGAGUGUAAAUGU ACUACGAUUA UUAGAUCU     U GU                       A          C        AUCUA
Stem-loop sequence	UUCUAGCAUUUCUCACAUUUAUACUGAUGUUAAUAAAUCUAGACAUAUAUAUCUAUCUAGAUUCAUUAGCAUCAAUGUAAAUGUGAGAAAUGCUAGAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288390.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   |||||||||||||||||||||||= targets:682   CAUUCUAGCAUUUCUCACAUUUAU   705 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence	NA	coding protein	psRNATarget
AK070012.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   ||||||||=||||||||||||||= targets:2342   CAUUCUAGUAUUUCUCACAUUUAU   2365 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence	NA	coding protein	psRNATarget
AK288502.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   |||||||||||||||||=|||||= targets:567   CAUUCUAGCAUUUCUCAUAUUUAU   590 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence	NA	coding protein	psRNATarget
XM_015767720.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   |||||||||||||||||=|||||= targets:568   CAUUCUAGCAUUUCUCAUAUUUAU   591 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA	uncharacterized LOC4330679(LOC4330679)	coding protein	psRNATarget
AK102955.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   ||||||||||||||*||||||||= targets:772   CAUUCUAGCAUUUCCCACAUUUAU   795 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence	NA	coding protein	psRNATarget
XM_015764968.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   |||||||*|||||||||||||||= targets:1148   CAUUCUAUCAUUUCUCACAUUUAU   1171 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA	uncharacterized LOC9269766(LOC9269766)	coding protein	psRNATarget
CT837839.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   ||||||||||||||*||||||||= targets:958   CAUUCUAGCAUUUCCCACAUUUAU   981 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence	NA	coding protein	psRNATarget
XM_015770157.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   ==||*|||=||||||||||||||= targets:4111   UGUUAUAGUAUUUCUCACAUUUAU   4134 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X1, mRNA	RING-H2 finger protein ATL3(LOC4331022)	coding protein	psRNATarget
XM_015770158.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   ==||*|||=||||||||||||||= targets:4111   UGUUAUAGUAUUUCUCACAUUUAU   4134 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL3 (LOC4331022), transcript variant X2, mRNA	RING-H2 finger protein ATL3(LOC4331022)	coding protein	psRNATarget
AK061459.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   ==||*|||=||||||||||||||= targets:1317   UGUUAUAGUAUUUCUCACAUUUAU   1340 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-308-A03, full insert sequence	NA	coding protein	psRNATarget
XM_015759228.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   *|||*||*|||||||||||||||* targets:2090   AAUUGUAACAUUUCUCACAUUUAA   2113 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA	MLO-like protein 9(LOC4349258)	coding protein	psRNATarget
AK072272.1	ncRNA:24   GUAAGAUCGUAAAGAGUGUAAAUG   1   *|||*||*|||||||||||||||* targets:1830   AAUUGUAACAUUUCUCACAUUUAA   1853 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence	NA	coding protein	psRNATarget