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BaseInfo

ncRNA ID novel_osa_miR1866
Species Oryza sativa
Class miRNA
Genome position Chr4:6210033-6210091 [-]
Reference genome IRGSP-1.0
Source SRR1298758;SRR1300837
Length 20
Mature sequence(if miRNA) 1 - GAAGACGUCGUUCGGCCGAG - 20
Stem-loop(if miRNA) --G      -     AGG        U GAU
   GGCCGA CGACG   UUCGGCCG G   G
   |||||| |||||   |||||||| |
   CCGGCU GCUGC   AAGCCGGC C   A
GAG      U     -AG        - AGC
Stem-loop sequence GGGCCGACGACGAGGUUCGGCCGUGGAUGACGACCGGCCGAAGACGUCGUUCGGCCGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015757068.1
ncRNA:20   GAGCCGGCUUGCUGCAGAAG   1
  *|||*|||||||=|||||||
targets:1679   AUCGCCCGAACGGCGUCUUC   1698

2.5 PREDICTED: Oryza sativa Japonica Group ADP-ribosylation factor GTPase-activating protein AGD3 (LOC4347541), mRNA ADP-ribosylation factor GTPase-activating protein AGD3(LOC4347541) coding protein psRNATarget
AK073117.1
ncRNA:20   GAGCCGGCUUGCUGCAGAAG   1
  *|||*|||||||=|||||||
targets:1665   AUCGCCCGAACGGCGUCUUC   1684

2.5 Oryza sativa Japonica Group cDNA clone:J033011K11, full insert sequence NA coding protein psRNATarget