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BaseInfo

ncRNA ID novel_osa_miR1861
Species Oryza sativa
Class miRNA
Genome position Chr11:20549590-20549643 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR1555747;SRR1555751;SRR2099567;SRR2099745;SRR1556014;SRR4407953;SRR1556018;SRR1556020
Length 24
Mature sequence(if miRNA) 31 - AUACGGAAAAUGCUAGAAUGACUU - 54
Stem-loop(if miRNA) --A     A           AC   UA
   UUAUU UAGUAUUUUUC  AUU  U
   ||||| |||||||||||  |||
   AGUAA AUCGUAAAAGG  UAG  A
UUC     G           CA   UU
Stem-loop sequence AUUAUUAUAGUAUUUUUCACAUUUAUAUUGAUACGGAAAAUGCUAGAAUGACUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015756761.1
ncRNA:24   UUCAGUAAGAUCGUAAAAGGCAUA   1
  ||||||||||||||||||||*|||
targets:3350   AAGUCAUUCUAGCAUUUUCCAUAU   3373

1.5 PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 (LOC4347249), mRNA G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370(LOC4347249) coding protein psRNATarget
XM_015779859.1
ncRNA:24   UUCAGUAAGAUCGUAAAAGGCAUA   1
  ||||||||=|||||||||||*|||
targets:925   AAGUCAUUUUAGCAUUUUCCAUAU   948

2.5 PREDICTED: Oryza sativa Japonica Group formin-like protein 3 (LOC4335722), mRNA formin-like protein 3(LOC4335722) coding protein psRNATarget