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BaseInfo

ncRNA ID	novel_osa_miR1857
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:1839541-1839712 [+]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR1849773;SRR2040399;SRR2040406;SRR2040410;SRR1298766
Length	22
Mature sequence(if miRNA)	1 - UUUUUACUUGUAACGUUUGACC - 22
Stem-loop(if miRNA)	--     A          U                     U      AUAAAUAUAAAAAACAAAUAG      UUAAAAUACUGUAGAUAAUAAA   UUUUU CUUGUAACGU UGACCACUCGUCUUAUUCAAA UUUUUU                     UUGUGC                      G   ||||| |||||||||| ||||||||||||||||||||| ||||||                     ||||||   AAAAA GAACGUUGCA ACUGGUGAGCAGAAUAAGUUU AAAAAA                     UUUGAU                      U UC     C          U                     U      --------------------C      AAUUAUUAAAAUAAACACUGAA
Stem-loop sequence	UUUUUACUUGUAACGUUUGACCACUCGUCUUAUUCAAAUUUUUUUAUAAAUAUAAAAAACAAAUAGUUGUGCUUAAAAUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUUAUUAAUAGUUUCAAAAAAUUUUGAAUAAGACGAGUGGUCAUACGUUGCAAGCAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288319.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |||||||||||=|||||||||| targets:1854   GGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK289013.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   *||=||||*||||||||||||| targets:4002   AGUUAAACAUUACAAGUAAAAA   4023 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK109584.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   ||||||||*||||||*|||||| targets:1116   GGUCAAACAUUACAAAUAAAAA   1137 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
XM_015761210.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1338   GAUCAAACGUUACAUGUAAAAA   1359 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X2, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761204.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1371   GAUCAAACGUUACAUGUAAAAA   1392 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X1, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761224.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1416   GAUCAAACGUUACAUGUAAAAA   1437 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X4, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget
XM_015761216.1	ncRNA:22   CCAGUUUGCAAUGUUCAUUUUU   1   |*||||||||||||*||||||| targets:1442   GAUCAAACGUUACAUGUAAAAA   1463 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327188 (LOC4327188), transcript variant X3, mRNA	uncharacterized LOC4327188(LOC4327188)	coding protein	psRNATarget