ncRNA ID | novel_osa_miR1851 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr10:945526-945606 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1555746;SRR2097779;SRR1555749;SRR2098822;SRR2099567;SRR1556014;SRR4407775;SRR4407777;SRR4407779;SRR4407954;SRR4407956;SRR4407959;SRR4407960;SRR1556016;SRR4407961;SRR4407962 |
Length | 24 |
Mature sequence(if miRNA) | 58 - AGGAUUUGUAAUGAAGCAAGUGGG - 81 |
Stem-loop(if miRNA) |
--    A   -CA   -        CAAUGC    ---G    UAC   CACU UGC   AUU CGGAUCCU      CCAG    CGUC   C   |||| |||   ||| ||||||||      ||||    ||||   GUGA ACG   UAA GUUUAGGA      GGUC    GCAG   C GG    -   AAG   U        -----U    GAAA    UUA |
Stem-loop sequence | CACUAUGCCAAUUCGGAUCCUCAAUGCCCAGGCGUCUACCCAUUGACGAAAGCUGGUAGGAUUUGUAAUGAAGCAAGUGGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015781304.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337084 (LOC4337084), transcript variant X2, mRNA | uncharacterized LOC4337084(LOC4337084) | coding protein | psRNATarget | |||||||||
AK121640.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J033055A13, full insert sequence | NA | coding protein | psRNATarget | |||||||||
XM_015781303.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337084 (LOC4337084), transcript variant X1, mRNA | uncharacterized LOC4337084(LOC4337084) | coding protein | psRNATarget |