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BaseInfo

ncRNA ID novel_osa_miR1851
Species Oryza sativa
Class miRNA
Genome position Chr10:945526-945606 [+]
Reference genome IRGSP-1.0
Source SRR1555746;SRR2097779;SRR1555749;SRR2098822;SRR2099567;SRR1556014;SRR4407775;SRR4407777;SRR4407779;SRR4407954;SRR4407956;SRR4407959;SRR4407960;SRR1556016;SRR4407961;SRR4407962
Length 24
Mature sequence(if miRNA) 58 - AGGAUUUGUAAUGAAGCAAGUGGG - 81
Stem-loop(if miRNA) --    A   -CA   -        CAAUGC    ---G    UAC
  CACU UGC   AUU CGGAUCCU      CCAG    CGUC   C
  |||| |||   ||| ||||||||      ||||    ||||
  GUGA ACG   UAA GUUUAGGA      GGUC    GCAG   C
GG    -   AAG   U        -----U    GAAA    UUA
Stem-loop sequence CACUAUGCCAAUUCGGAUCCUCAAUGCCCAGGCGUCUACCCAUUGACGAAAGCUGGUAGGAUUUGUAAUGAAGCAAGUGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015781304.1
ncRNA:24   GGGUGAACGAAGUAAUGUUUAGGA   1
  **||*|||||||||||||||||**
targets:3064   AACAGUUGCUUCAUUACAAAUCGA   3087

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337084 (LOC4337084), transcript variant X2, mRNA uncharacterized LOC4337084(LOC4337084) coding protein psRNATarget
AK121640.1
ncRNA:24   GGGUGAACGAAGUAAUGUUUAGGA   1
  **||*|||||||||||||||||**
targets:3661   AACAGUUGCUUCAUUACAAAUCGA   3684

2.5 Oryza sativa Japonica Group cDNA clone:J033055A13, full insert sequence NA coding protein psRNATarget
XM_015781303.1
ncRNA:24   GGGUGAACGAAGUAAUGUUUAGGA   1
  **||*|||||||||||||||||**
targets:3656   AACAGUUGCUUCAUUACAAAUCGA   3679

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4337084 (LOC4337084), transcript variant X1, mRNA uncharacterized LOC4337084(LOC4337084) coding protein psRNATarget