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BaseInfo

ncRNA ID	novel_osa_miR1846
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:20376774-20376997 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555749;SRR2098557;SRR2098822;SRR1555751;SRR2099568;SRR2458631;SRR1556011;SRR1556014;SRR4407954;SRR4407955;SRR4407956;SRR4407957;SRR1556016;SRR4407961;SRR1556018;SRR1654491
Length	24
Mature sequence(if miRNA)	201 - AAACGACUUAAAAUAUGAAACGGA - 224
Stem-loop(if miRNA)	--       CG  AC    A             -C   UUC         CAAUCUA          U  GCAA     AA     -   -ACUA  U    -     C  ACA   CGUUUCA  UU  AAGU GUUUGACUUUUUU  CUA   AAGUUUGGC       AUAGAAAAAU UA    UAUUU  AACGC CAA     GU UCAU AAAAU UA   U   |||||||  ||  |||| |||||||||||||  |||   |||||||||       |||||||||| ||    |||||  ||||| |||     || |||| ||||| ||   GCAAAGU  AA  UUCA CAAACUGAAAAAA  GAU   UUCAAACUG       UAUCUUUUUA AU    AUAAA  UUGUG GUU     CA AGUA UUUUA AU   U AG       AU  AA    G             AA   UAA         AUUCAAA          U  AAUC     GG     U   GUUUG  U    G     U  AAG
Stem-loop sequence	CGUUUCACGUUACAAGUAGUUUGACUUUUUUCCUAUUCAAGUUUGGCCAAUCUAAUAGAAAAAUUUAGCAAUAUUUAAAACGCCAAACUAGUUUCAUAAAAUCUAACAUUGAAUAUAUUUUGAUGAUACGUUUGUUGUGUGUUGGAAAUACUAAUAUAUUUUUCUAUAAACUUAGUCAAACUUAAUUAGAAAAAAAAGUCAAACGACUUAAAAUAUGAAACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015756146.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||||||||||||*|||||||||| targets:3515   UCCGUUUCAUAUUAUAAGUCGUUU   3538 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group type I inositol polyphosphate 5-phosphatase 2 (LOC4347930), transcript variant X4, mRNA	type I inositol polyphosphate 5-phosphatase 2(LOC4347930)	coding protein	psRNATarget
AK064238.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||||||||||||*|||||||||| targets:1111   UCCGUUUCAUAUUAUAAGUCGUUU   1134 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-105-A09, full insert sequence	NA	coding protein	psRNATarget
AK063297.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   ||=||||||||||*|||||||||| targets:1477   UCUGUUUCAUAUUGUAAGUCGUUU   1500 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-113-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015789811.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||||||=|||||*|||||||||| targets:760   UCCGUUUUAUAUUAUAAGUCGUUU   783 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343998 (LOC4343998), transcript variant X1, mRNA	uncharacterized LOC4343998(LOC4343998)	coding protein	psRNATarget
XM_015767715.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||*|||||||||*|||||||||| targets:2672   UCCAUUUCAUAUUAUAAGUCGUUU   2695 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group chaperone protein ClpB1-like (LOC107276891), mRNA	chaperone protein ClpB1-like(LOC107276891)	coding protein	psRNATarget
AK288575.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||||*|||||||*|||||||||| targets:2616   UCCGUCUCAUAUUAUAAGUCGUUU   2639 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence	NA	coding protein	psRNATarget
AK288895.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||*|||||||||*|||||||||| targets:3178   UCCAUUUCAUAUUAUAAGUCGUUU   3201 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090080F08, full insert sequence	NA	coding protein	psRNATarget
XM_015795843.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||||*|||||||*|||||||||| targets:2631   UCCGUCUCAUAUUAUAAGUCGUUU   2654 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g56310 (LOC4347034), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g56310(LOC4347034)	coding protein	psRNATarget
AK240728.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |||*|||=|||||*|||||||||| targets:1051   UCCAUUUUAUAUUAUAAGUCGUUU   1074 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J043029C11, full insert sequence	NA	coding protein	psRNATarget
XM_015766509.1	ncRNA:24   AGGCAAAGUAUAAAAUUCAGCAAA   1   |*=|||||||||||||||*||||* targets:1412   UGUGUUUCAUAUUUUAAGCCGUUA   1435 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pectin acetylesterase 5 (LOC4324923), transcript variant X2, mRNA	pectin acetylesterase 5(LOC4324923)	coding protein	psRNATarget