ncRNA ID | ath-miR5026 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:7844496-7844688 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 117 - ACUCAUAAGAUCGUGACACGU - 137 |
Stem-loop(if miRNA) |
       -       -AUA                             A     A U    G     C C                       CAU AUAAAAA GAAAAUU    UUUACACGUGUCAAAAUCUGAGAUCGAUA AUUUA C CGUG CACGA C UGUGAGUUACUAACUUUGAAAAC   A ||||||| |||||||    ||||||||||||||||||||||||||||| ||||| | |||| ||||| | |||||||||||||||||||||||   G UAUUUUU CUUUUAA    AAAUGUGUAUAGUUUUAGAUUUUAGUUAU UAAAU G GCAC GUGCU G AUACUCAAUGAUUGAAACUUUUG   C        A       AACA                             C     G U    A     A A                       AUA |
Stem-loop sequence | AUAAAAAGAAAAUUAUAUUUACACGUGUCAAAAUCUGAGAUCGAUAAAUUUAACUCGUGGCACGACCCUGUGAGUUACUAACUUUGAAAACCAUAGCAUAGUUUUCAAAGUUAGUAACUCAUAAGAUCGUGACACGUGGUAAAUCUAUUGAUUUUAGAUUUUGAUAUGUGUAAAACAAAAUUUUCAUUUUUAU |
1 | PMID:21357774
"MicroRNA activity in the Arabidopsis male germline"; Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD; J Exp Bot. 62:1611-1620(2011). |
2 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |