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BaseInfo

ncRNA ID ath-miR5026
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:7844496-7844688 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 117 - ACUCAUAAGAUCGUGACACGU - 137
Stem-loop(if miRNA)        -       -AUA                             A     A U    G     C C                       CAU
AUAAAAA GAAAAUU    UUUACACGUGUCAAAAUCUGAGAUCGAUA AUUUA C CGUG CACGA C UGUGAGUUACUAACUUUGAAAAC   A
||||||| |||||||    ||||||||||||||||||||||||||||| ||||| | |||| ||||| | |||||||||||||||||||||||   G
UAUUUUU CUUUUAA    AAAUGUGUAUAGUUUUAGAUUUUAGUUAU UAAAU G GCAC GUGCU G AUACUCAAUGAUUGAAACUUUUG   C
       A       AACA                             C     G U    A     A A                       AUA
Stem-loop sequence AUAAAAAGAAAAUUAUAUUUACACGUGUCAAAAUCUGAGAUCGAUAAAUUUAACUCGUGGCACGACCCUGUGAGUUACUAACUUUGAAAACCAUAGCAUAGUUUUCAAAGUUAGUAACUCAUAAGAUCGUGACACGUGGUAAAUCUAUUGAUUUUAGAUUUUGAUAUGUGUAAAACAAAAUUUUCAUUUUUAU

Reference

1 PMID:21357774
"MicroRNA activity in the Arabidopsis male germline";
Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD;
J Exp Bot. 62:1611-1620(2011).
2 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).