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BaseInfo

ncRNA ID	novel_osa_miR1836
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:4636106-4636200 [-]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR2857729;SRR2857731;SRR2857734;SRR3123651;SRR1738240
Length	24
Mature sequence(if miRNA)	72 - AAUGGUGUAAUCGGAUUAUAGAUC - 95
Stem-loop(if miRNA)	--AA    GUA             ------------   GAU AGUAAUUUAAAU     UGGU   AUCGGAUUAUAGA            UCG   A            G     ||||   |||||||||||||            |||   |            A     AUCA   UGGUUUAAUAUUU            AAG   A            A GAUG    -UG             ACAGGAAAGAAA   --- AGAAUAUCUUAA
Stem-loop sequence	AAUGGUGUAAUCGGAUUAUAGAUCGGAUAAGUAAUUUAAAUGAAAAUUCUAUAAGAAGAAAAAGAAAGGACAUUUAUAAUUUGGUGUACUAGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121178.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   |||||||||||||||||||||=|| targets:2438   GAUCUAUAAUCCGAUUACACCGUU   2461 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
AK288245.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   |||||||=|||||||||||||=|| targets:1246   GAUCUAUGAUCCGAUUACACCGUU   1269 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090014F18, full insert sequence	NA	coding protein	psRNATarget
AK289147.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   ||||||*||||||||||||||||| targets:133   GAUCUACAAUCCGAUUACACCAUU   156 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090099L02, full insert sequence	NA	coding protein	psRNATarget
AK288884.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   ||||||*||||=|||||||||||| targets:50   GAUCUACAAUCUGAUUACACCAUU   73 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079K05, full insert sequence	NA	coding protein	psRNATarget
AK288884.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   ***=||*||||=|||||||||||| targets:69   CCAUUACAAUCUGAUUACACCAUU   92 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079K05, full insert sequence	NA	coding protein	psRNATarget
XM_015787375.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   ||||||*||||=|||||||||||| targets:44   GAUCUACAAUCUGAUUACACCAUU   67 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable CCR4-associated factor 1 homolog 9 (LOC107278607), mRNA	probable CCR4-associated factor 1 homolog 9(LOC107278607)	coding protein	psRNATarget
XM_015787375.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   ***=||*||||=|||||||||||| targets:63   CCAUUACAAUCUGAUUACACCAUU   86 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable CCR4-associated factor 1 homolog 9 (LOC107278607), mRNA	probable CCR4-associated factor 1 homolog 9(LOC107278607)	coding protein	psRNATarget
AK121329.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   ||||||*=|||||||||||||||| targets:2894   GAUCUACGAUCCGAUUACACCAUU   2917 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023118A19, full insert sequence	NA	coding protein	psRNATarget
AK107514.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   *|||-||=||||||||=||||||| targets:1069   AAUC-AUGAUCCGAUUGCACCAUU   1091 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-F02, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   CUAGAUAUUAGGCUAAUGUGGUAA   1   *|||*||=|||||||*|||||||| targets:3559   AAUCCAUGAUCCGAUCACACCAUU   3582 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget