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BaseInfo

ncRNA ID	novel_osa_miR1835
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:5668349-5668431 [-]
Reference genome	IRGSP-1.0
Source	SRR1743006
Length	23
Mature sequence(if miRNA)	61 - AAUAAGUUGUCUGUUUUUUUCAG - 83
Stem-loop(if miRNA)	--AA    UU    -              ACUCCCAAUAAUCU           UAAG  GUCU GUUUUUUUCAGCUU              GGAUUAU     ||||  |||| ||||||||||||||              ||||||A     AUUC  CGGA CAAAGAAAGUUGAA              CCUAAUA AAAG    --    A              -------------C
Stem-loop sequence	AAUAAGUUGUCUGUUUUUUUCAGCUUACUCCCAAUAAUCUGGAUUAUAAUAAUCCCAAGUUGAAAGAAACAAGGCCUUAGAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK120938.1	ncRNA:23   GACUUUUUUUGUCUGUUGAAUAA   1   ||||||||||||||||||||||| targets:689   CUGAAAAAAACAGACAACUUAUU   711 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023037A21, full insert sequence	NA	coding protein	psRNATarget
CT830738.1	ncRNA:23   GACUUUUUUUGUCUGUUGAAUAA   1   ||||||=|||||||||||||||| targets:711   CUGAAAGAAACAGACAACUUAUU   733 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA015O06, full insert sequence	NA	coding protein	psRNATarget
AK100384.1	ncRNA:23   GACUUUUUUUGUCUGUUGAAUAA   1   ||||||=|||||||||||||||| targets:990   CUGAAAGAAACAGACAACUUAUU   1012 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023085H13, full insert sequence	NA	coding protein	psRNATarget
AK243105.1	ncRNA:23   GACUUUUUUUGUCUGUUGAAUAA   1   |*|*|||||||||*||||||||| targets:636   CCGUAAAAAACAGUCAACUUAUU   658 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100025O14, full insert sequence	NA	coding protein	psRNATarget
XM_015785803.1	ncRNA:23   GACUUUUUUUGUCUGUUGAAUAA   1   |*|*|||||||||*||||||||| targets:646   CCGUAAAAAACAGUCAACUUAUU   668 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group syntaxin-43 (LOC4339929), mRNA	syntaxin-43(LOC4339929)	coding protein	psRNATarget