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BaseInfo

ncRNA ID	novel_osa_miR1832
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:23997513-23997683 [-]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR1849769;SRR1849770;SRR1849773;SRR1849774;SRR1849775;SRR1849776;SRR2040380;SRR2040383;SRR2040386;SRR2040388;SRR2040392;SRR2040394;SRR2040399;SRR2040400;SRR2040401;SRR2040404;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2857731;SRR2857732;SRR2857733;SRR2857734;SRR2857736;SRR3123651;SRR3234042;SRR1738209;SRR1738224;SRR1738240
Length	21
Mature sequence(if miRNA)	151 - UUUUUUGACAAACGUUUGACC - 171
Stem-loop(if miRNA)	--    U    A         C U               AAA     A   U     -UU     -   UG  A     UUUAU      UUUU UGAC AACGUUUGA C UUCGUCUUAUUCAAA   UUUAU UAA UAUAA   UAUUU UAU  UG CUUGA     CAUC   |||| |||| ||||||||| | |||||||||||||||   ||||| ||| |||||   ||||| |||  || |||||     |||A   GAAA AUUG UUGCAAACU G GAGCAGAAUAAGUUU   AAAUA GUU AUAUU   AUGAA AUA  AC GGAUU     GUAA CU    U    G         A U               AAA     C   U     UUU     U   GU  -     -UCUU
Stem-loop sequence	UUUUUUGACAAACGUUUGACCUUUCGUCUUAUUCAAAAAAUUUAUAUAAUUAUAAUUUAUUUUAUUGUGACUUGAUUUAUCAUCAAAUGUUCUUUAGGCAUGAUAUAAGUAUUUUUAUAUUUGCAUAAAAAAUUUGAAUAAGACGAGUGAUCAAACGUUGGUUAUAAAGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835080.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   ||||||||||||||||||||= targets:1134   GGUCAAACGUUUGUCAAAAAG   1154 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence	NA	coding protein	psRNATarget
XM_015781390.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   |||||||||||*||||||||= targets:1444   GGUCAAACGUUGGUCAAAAAG   1464 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X2, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
XM_015781389.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   |||||||||||*||||||||= targets:1444   GGUCAAACGUUGGUCAAAAAG   1464 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4336685 (LOC4336685), transcript variant X1, mRNA	uncharacterized LOC4336685(LOC4336685)	coding protein	psRNATarget
AK288703.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   |*|||||=||||||||||||= targets:3207   GAUCAAAUGUUUGUCAAAAAG   3227 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence	NA	coding protein	psRNATarget
JB164475.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *||||||||||*||||||||= targets:178   AGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2559767	NA	coding protein	psRNATarget
HI404014.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *||||||||||*||||||||= targets:178   AGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236144.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *||||||||||*||||||||= targets:178   AGUCAAACGUUGGUCAAAAAG   198 Target Full Sequence	2.5	Sequence 2139 from Patent EP2985353	NA	coding protein	psRNATarget
AK068361.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *|||||||||||*|||||||= targets:744   AGUCAAACGUUUAUCAAAAAG   764 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence	NA	coding protein	psRNATarget
XM_015766454.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *|**|||=||||||||||||| targets:1921   AGAGAAAUGUUUGUCAAAAAA   1941 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 (LOC4326771), mRNA	ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1(LOC4326771)	coding protein	psRNATarget
AK071981.1	ncRNA:21   CCAGUUUGCAAACAGUUUUUU   1   *|**|||=||||||||||||| targets:1929   AGAGAAAUGUUUGUCAAAAAA   1949 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013089O19, full insert sequence	NA	coding protein	psRNATarget