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BaseInfo

ncRNA ID novel_osa_miR1829
Species Oryza sativa
Class miRNA
Genome position Chr11:23634493-23634560 [+]
Reference genome IRGSP-1.0
Source SRR1743006
Length 24
Mature sequence(if miRNA) 1 - GUUGACCGCCGGCUGUGGGGUCGG - 24
Stem-loop(if miRNA) --    A        UGUG  GU  G G  GA  G
  GUUG CCGCCGGC    GG  CG G GC  GC A
  |||| ||||||||    ||  || | ||  ||
  CGAC GGCGGCCG    UC  GC C CG  CG C
GG    -        CGAA  UG  G G  -G  G
Stem-loop sequence GUUGACCGCCGGCUGUGGGGUCGGGGGCGAGCGACGGCGGCGCGCGGUCUAAGCGCCGGCGGCAGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK109971.1
ncRNA:24   GGCUGGGGUGUCGGCCGCCAGUUG   1
  ||-|||||||*|||*|||||||||
targets:2555   CC-ACCCCACCGCCCGCGGUCAAC   2577

2.5 Oryza sativa Japonica Group cDNA clone:002-159-C06, full insert sequence NA coding protein psRNATarget