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BaseInfo

ncRNA ID	novel_osa_miR1828
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:20864701-20864903 [+]
Reference genome	IRGSP-1.0
Source	SRR1743006;SRR1849771;SRR2099746;SRR2857728;SRR1738237
Length	23
Mature sequence(if miRNA)	1 - AUAACUCAUCAAGAUCUAGAACU - 23
Stem-loop(if miRNA)	--                               G  C          A    A     A      C            A  G    --CUCUUAUC     U   AUAACUCAUCAAGAUCUAGAACUUUUAUUUU GU AUUUCUUCAU CGAC AAGUG UAGUAA AUUGUUCACAAA UU ACAU          UGGUU U   ||||||||||||||||||||||||||||||| || |||||||||| |||| ||||| |||||| |||||||||||| || ||||          ||||| A   UAUUGAGUAGUUCUAGAUUUUGAAAAUAAAA CA UAAAGAAGUA GCUG UUUAC AUCAUU UAAUAAGUGUUU AA UGUA          AUCAA U CU                               A  A          G    C     A      A            A  A    UAUACACAAU     A
Stem-loop sequence	AUAACUCAUCAAGAUCUAGAACUUUUAUUUUGGUCAUUUCUUCAUACGACAAAGUGAUAGUAACAUUGUUCACAAAAUUGACAUCUCUUAUCUGGUUUUAUAAACUAUAACACAUAUAUGUAAAAUUUGUGAAUAAUAUUACUAACAUUUCGUCGGAUGAAGAAAUAACAAAAAUAAAAGUUUUAGAUCUUGAUGAGUUAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107543.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||=|||||||||||||||||| targets:1173   AGUUUUAGAUCUUGAUGAGUUAU   1195 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
AK107543.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||*|||||||||||| targets:1327   AGUUAUAGAUGUUGAUGAGUUAU   1349 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-129-H11, full insert sequence	NA	coding protein	psRNATarget
XM_015764209.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X7, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764210.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X12, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764208.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X2, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
XM_015764207.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:52   AGUUAUAGAUCUUGAUGAGUUAU   74 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X1, mRNA	3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929)	coding protein	psRNATarget
AK068923.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*|||||||||||||||||| targets:1479   AGUUAUAGAUCUUGAUGAGUUAU   1501 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013170A09, full insert sequence	NA	coding protein	psRNATarget
AK121156.1	ncRNA:23   UCAAGAUCUAGAACUACUCAAUA   1   ||||*||*||||||||||||||| targets:122   AGUUAUAAAUCUUGAUGAGUUAU   144 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023079A20, full insert sequence	NA	coding protein	psRNATarget