Search result

BaseInfo

ncRNA ID	novel_osa_miR1824
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:9223805-9223914 [-]
Reference genome	IRGSP-1.0
Source	SRR1743002;SRR2857730;SRR3123645;SRR1738226;SRR1738227
Length	23
Mature sequence(if miRNA)	88 - CACGAGACAAAUCUUUUGAGCCU - 110
Stem-loop(if miRNA)	--CA      A           C       AG    C      G   GU    U  U     CGAGAC AAUCUUUUGAG CUAAUUA  CCGU AUUAGC CAU  GAGU AC G     |||||| ||||||||||| |||||||  |||| |||||| |||  |||| ||     GCUCUG UUAGAAAACUC GAUUAAU  GGUA UAAUUG GUA  UUCA UG U UAAC      C           A       CA    C      -   --    -  A
Stem-loop sequence	CACGAGACAAAUCUUUUGAGCCUAAUUAAGCCGUCAUUAGCGCAUGUGAGUUACUGUAGUACUUAUGGUUAAUCAUGGACUAAUUAGACUCAAAAGAUUCGUCUCGCAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK121199.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||||||||||||||*|||||||| targets:1468   AGGCUCAAAAGAUUCGUCUCGUG   1490 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence	NA	coding protein	psRNATarget
CT837754.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||||||||||||||||||** targets:1366   AGGCUCAAAAGAUUUGUCUCGCA   1388 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence	NA	coding protein	psRNATarget
CT833754.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||||||*|||||||| targets:806   AGGCUUAAAAGAUUCGUCUCGUG   828 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence	NA	coding protein	psRNATarget
AK062636.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||||||*|||||||| targets:804   AGGCUUAAAAGAUUCGUCUCGUG   826 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-105-D02, full insert sequence	NA	coding protein	psRNATarget
XM_015790304.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||||||*|||||||| targets:812   AGGCUUAAAAGAUUCGUCUCGUG   834 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL45 (LOC4344335), mRNA	RING-H2 finger protein ATL45(LOC4344335)	coding protein	psRNATarget
AK288638.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||*|||||||||||| targets:381   AGGCUUAAAAAAUUUGUCUCGUG   403 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055N09, full insert sequence	NA	coding protein	psRNATarget
AK120827.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||*|||||||||||| targets:4105   AGGCUUAAAAAAUUUGUCUCGUG   4127 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023019E13, full insert sequence	NA	coding protein	psRNATarget
AK121287.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   |||||=||||*|||||||||||| targets:4543   AGGCUUAAAAAAUUUGUCUCGUG   4565 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108P15, full insert sequence	NA	coding protein	psRNATarget
LQ236559.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||=||||| targets:50   AGACUUAAAAGAUUUGUUUCGUG   72 Target Full Sequence	2.5	Sequence 2554 from Patent EP2985353	NA	coding protein	psRNATarget
HI404429.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||=||||| targets:50   AGACUUAAAAGAUUUGUUUCGUG   72 Target Full Sequence	2.5	Sequence 2554 from Patent EP2074227	NA	coding protein	psRNATarget
JB164890.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||=||||| targets:50   AGACUUAAAAGAUUUGUUUCGUG   72 Target Full Sequence	2.5	Sequence 2554 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015781196.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ||*||=|||||||||||||||*| targets:2153   AGACUUAAAAGAUUUGUCUCGCG   2175 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK061474.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ****||=|||||||||||||||* targets:516   UCCAUCGAAAGAUUUGUCUCGUA   538 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:006-308-F02, full insert sequence	NA	coding protein	psRNATarget
AK058355.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ****||=|||||||||||||||* targets:594   UCCAUCGAAAGAUUUGUCUCGUA   616 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-014-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015769654.1	ncRNA:23   UCCGAGUUUUCUAAACAGAGCAC   1   ****||=|||||||||||||||* targets:3848   UCCAUCGAAAGAUUUGUCUCGUA   3870 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 31 (LOC4323865), mRNA	ABC transporter G family member 31(LOC4323865)	coding protein	psRNATarget